MmuINT0168106 @ mm9
Intron Retention
Gene
ENSMUSG00000036752 | Tubb2c
Description
tubulin, beta 4B class IVB [Source:MGI Symbol;Acc:MGI:1915472]
Coordinates
chr2:25079454-25079752:-
Coord C1 exon
chr2:25079644-25079752
Coord A exon
chr2:25079565-25079643
Coord C2 exon
chr2:25079454-25079564
Length
79 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CGTCCCCCTGTCCCAACCAGGTG
3' ss Score
10.02
Exon sequences
Seq C1 exon
TTCTGGGAGGTAATCAGCGACGAGCATGGCATTGATCCCACTGGCACTTACCACGGAGATAGCGACCTCCAGCTGGAGCGCATCAACGTGTACTACAACGAAGCCACCG
Seq A exon
GTAAGGCTCCTCTACCCCATCCATCCTCCTCACCACCCTTCCAGTTTGAGCACACTTGACGTCCCCCTGTCCCAACCAG
Seq C2 exon
GTGGCAAGTATGTGCCCCGCGCCGTGCTCGTGGACTTGGAGCCCGGCACCATGGACTCGGTGCGTTCAGGGCCCTTCGGGCAGATCTTCAGACCTGATAACTTCGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036752-Tubb2c:NM_146116:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGGCATTGATCCCACTG
R:
AGGTCTGAAGATCTGCCCGAA
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: