BtaINT0155336 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25950857-25952515:+
Coord C1 exon
chr26:25950857-25951002
Coord A exon
chr26:25951003-25952334
Coord C2 exon
chr26:25952335-25952515
Length
1332 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CTTTTCTCCACCCTTCCTAGGAA
3' ss Score
9.81
Exon sequences
Seq C1 exon
CGAGTTCATGGTGGAGGAGCACGAGCTGCGCAAGGAGAAGATCCAGGAGGACTACAACGACAAATACTGGGAGCTGCGCTACACCGTGGTGCAGCGGCACATCCCGTCCTTCCTGCAGAAGATGGCCGGCAAGGTGCTGAGCACGG
Seq A exon
GTGAGCGCCAGCCCGCCGCGCCCTGGGCGCCTGCGTCTCGCAGCAGCCGGGGCCCCCCGCCGCGCGCCCTGGGCGCCTGCGTCTCCACACGGCAGCTGGGGGCCCCCCGCTGCGGACCCCGGGTGCCTGGGTTTCCACACAGCAGCCAGTGCCCAGCGCCCCCGGGGACACCAGCTAGGGGACCACCCCACTGAACTCGGCTCTGACACTTAACCGCCGGGCCAGTGTGGCCCCCAAGGATCAGGGCTCCCTCGAGGCCTGCCCCAGCAGACCCCTGTCGTGAGCGTCGGGTCCCCAGGCCACTGCATCTTTCCAGTGTGGCCACCAGTTGGGGTCCCGGGCTCCTCCCCAGGTTTGATATTTGCTACGCCGGCCCCCAGACTTGGAGAAACTTTACTTAGCAGATACGCTGGTCTGCTATAAAGATGTTGTAATGGATACAAACAGCCCGATGAGGAGGTCTGCAGGGCAGGTCTGGAGGGTCCCAAACTCGGGAGTGTGTCTGTCCCCAAGGAGCTGGGGGCCAGCATGCCCCTCCCTCCTGGCAGGTGGACGTGCTCACCAGCCCAGAAGCTCTCCAAGCCCGTCCCGTAGGGGGATCACGTAGGTTCCAGGACAGGGCACGACCAGTCCTCTCGTGGGCTCTTGGTCCCTAACTTGACCTCCAGCCACTCCCCTCCCCAGGTATCGGGGGACAGGCCGAGGGTCTCACTGTCCTGCCGTGTGGTTGGTTCCTCTGGCCGCCAGCCTGCCTCCTGAAGGTCTACAGTGACGGCCAGGAGTCCCCTCGTGGGTGTGAACTCAGGTGGGGTGAGAGGGTTCTGGGTGCTCAGTGATGAACCAGGAGCAAGACCAGAGCACGTGTCGTCTTTGTCCCAGCATCACAGGCCAGCAGAGGAAAAGCAGGAAAGGGCACAGGCCCTGCTGGGCCGGCGGTGTTTTTAGGCATCACCTTGTGGGTCAGGAACCTGGTATAGAGACACGTGTGTTACCTAGAGACAGGCTCCAGCCAGGGCCCTGACGTTGGTTCTGAGAGCTGGGCTGGGGGCAGGGCTGGGAAGTGGCGGAGGGTCTGGCTCTCTGAGGTGGTTCTCGTGGCCTCGATGAGGAAAGTCCGGGGTAAGGACTCGCAGGAAGTCGCAGTGCTCGGTGGGTGACGGCTGTACTGTGCTGCTCTGCTCTGGGCGAGGGGTGGTTTCTGGGACTGTTCTCTCCCGGTTGGTTCTGTTCCCGACCTCTGGCCAGCGTCGGGGCGGCGGCCTCTCGGGTTCAGGCCTGCAGCTTGTCACGTGTGCAGCAGAAGTTCCATGTGCTTTTCTCCACCCTTCCTAG
Seq C2 exon
GAAAATACCTGAACGTGGTCAGAGAGTGTGGTCATGACGTCACGTGTCCGGCGGCCAAAGAGGTCATCTACACGCTGAAGGAGCGGGCATACGTGGAGCAAATCGAGAAAGCCTTTGGCTATGCCAGCAAGGTGCTGCTGGGCTTCCTCATGGAGGAGAAGGAGCTCGTAGCTCACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395:ENSBTAT00000008383:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(20.7=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCATGGTGGAGGAGCA
R:
GCTACGAGCTCCTTCTCCTCC
Band lengths:
318-1650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]