HsaINT0175401 @ hg19
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:18599]
Coordinates
chr10:135102344-135103473:-
Coord C1 exon
chr10:135103328-135103473
Coord A exon
chr10:135102525-135103327
Coord C2 exon
chr10:135102344-135102524
Length
803 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TTGAATTTCTGTGTTTTCAGGAA
3' ss Score
9.61
Exon sequences
Seq C1 exon
TGAGTTTATGGTCGAGGAGCACGAGCTGCGGAAGGAGAGGATCCAGGAGGATTACAACGACAAGTACTGGGACCAGCGGTACACCATCGTCCAGCAGCAGATCCCGTCCTTCCTGCAGAAAATGGCGGACAAGATCCTCAGCACAG
Seq A exon
GTGCGGCGCAGCGGGCGGGGACTTGGGGTGCGCAGCACAGCTCTGCCTGGAGAGTCTCCTGCAGCCCAGGCCCTCCCACCGGGAGCCTGTGCCTCACCCTGTGGTTGCCCTGAGCCCTGGTGTCCGTGAATGCGGGGCTGAGGTCAGGACTGGCCCGTGGGCTGGGCTGCGGCGCTGAGTTAGGCCTTGAGATGGTCTCTGTTGCCAGGTTCCCTCAGGTTTCCATCTCCGGGACTCTGTCCCTGACCCTGCGAGGCTCTCTCACAGGTGCCTTCTCTATTTCTGTTTCTGATTTCTAAAACTCCGCTAGCATGTCAGGAAAAACCAGCAAAGACACACGCCTGGCGGCCGGCAGTGTTTCCTATCTCTGACCACACAGGTTAGGGCCTGACCTGGACCCAGGGCAGTGGCGCGGGGACTTGGACTCGGCACATCGGGGCCGTCACGAAAGGGTTGGGAAGCGATTAGCCATCCGGTTCTCATAATGCCTGTTCGAAATTATTTCTGTGCCCTTGGTTAGAAAATTCCAGATGTGCAGAGCCACGGCAAAGCCCTGCCACCACCAGCTCAGTCTGTAGCCGCTGACAGTGATTTACCGGGAAGGAGCAAGGGTGTGGAGCCGCCTCATGCAGCCCAGTTTCCATTCCACTGCCTTCTGTGTAGACAAAGACAGCTGGGGCCTCAGACTGACCGTGTGGAGAGCCCATTCAATGTCCATTCCACTGCCTCCTGTGTAGACAAAGACAGCTGGGGCCTGAGATCGACCATGTGGAGAATAAAATTTTGAATTTCTGTGTTTTCAG
Seq C2 exon
GAAAATATCTAAATGTGGTCAGAGAGTGTGGCCATGACGTCACCTGCCCGGTGGCTAAAGAGATCATCTACACGTTAAAAGAGCGGGCGTATGTGGAGCAGATCGAGAAGGCGTTTAACTACGCCAGCAAGGTGCTGCTGGACTTCCTGATGGAGGAGAAGGAGCTGGTGGCTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-TUBGCP2:NM_006659:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PU(13.9=97.9)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTATGGTCGAGGAGCAC
R:
GCCACCAGCTCCTTCTCCTC
Band lengths:
318-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)