RnoINT0158291 @ rn6
Intron Retention
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212342260-212343207:-
Coord C1 exon
chr1:212343062-212343207
Coord A exon
chr1:212342441-212343061
Coord C2 exon
chr1:212342260-212342440
Length
621 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
CTTTTTCTTTTTGTTCTCAGGAA
3' ss Score
11.18
Exon sequences
Seq C1 exon
TGAGTTCATGGTGGAGGAGCACGAGCTGCGGAAGGAGAAGATACAGGAGGACTACAATGACAAGTACTGGGACCAGCGCTACACTGTGCTGCCACAGCAGATCCCATCCTTCCTGCAGAAGGTAGCAGGCAAGATCCTCAGCACAG
Seq A exon
GTGACTATGCTTGGACCGCTCTCCAAGGAGGTCAATGGCCTCTTCATGCTGTGTCATGGGACCCGTGGGTCATCACAGCCTTCCAGGCCCTCTGCCCCTGAAGATGACTTAGCTGGGAATGGCCTACTACCCTGAGCTTCTAGCCACTGGTTGGCCCTAGTTCTCCATCACTTTATTCAGCCCCCTAATCAGGACGCTGTCTGCCTCAGACAAAGCCTTCTATCTTGGGTTTTACATCTAACTCCATCATATAGCAAAGAAAAGCCATGAGGAACCCACACCTTCCAGGCCAGCTGCATCTTTTAGTTTTATTGCACAGGATAGGGACTGATGTAGAGATTAGGCAAATCCTTGGGGCCTTAACATAGTGCTCTGCTCTGAAAGCTGAACAGAATCAGAAAGGGCTAGGAGATTACTTAGCAATCTATCTCTCAAGGCTTTTCAAAATCCTTCCTATAAAATACAGACCTGAAAAACTATTGCACAATCTTTCCAGGAAACAAATTGTACCTCATGTCTGGCCTACTTCCCCATGTTTGATTGGCGTCATAAAGGCCCAGGCCTGAGACTCAGCATGTACAGGGATACTGAGTCCACCTTCCTTTTTCTTTTTGTTCTCAG
Seq C2 exon
GAAAATACCTAAATGTGGTCAGAGAATGTGGTCATGATGTCACCTGTCCCGTAGCCAAAGAGATCATCTATACCCTCAAAGAGCGGGCATATGTGGAGCAGATTGAGAAAGCGTTCAATTATGCCAGCAAAGTGCTGCTGGACTTCCTCATGGAGGAGAAGGAGCTGGTGGCCCACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137:ENSRNOT00000024573:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(9.4=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCATGGTGGAGGAGCA
R:
GCCACCAGCTCCTTCTCCTC
Band lengths:
318-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]