HsaINT0175401 @ hg38
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133288840-133289969:-
Coord C1 exon
chr10:133289824-133289969
Coord A exon
chr10:133289021-133289823
Coord C2 exon
chr10:133288840-133289020
Length
803 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TTGAATTTCTGTGTTTTCAGGAA
3' ss Score
9.61
Exon sequences
Seq C1 exon
TGAGTTTATGGTCGAGGAGCACGAGCTGCGGAAGGAGAGGATCCAGGAGGATTACAACGACAAGTACTGGGACCAGCGGTACACCATCGTCCAGCAGCAGATCCCGTCCTTCCTGCAGAAAATGGCGGACAAGATCCTCAGCACAG
Seq A exon
GTGCGGCGCAGCGGGCGGGGACTTGGGGTGCGCAGCACAGCTCTGCCTGGAGAGTCTCCTGCAGCCCAGGCCCTCCCACCGGGAGCCTGTGCCTCACCCTGTGGTTGCCCTGAGCCCTGGTGTCCGTGAATGCGGGGCTGAGGTCAGGACTGGCCCGTGGGCTGGGCTGCGGCGCTGAGTTAGGCCTTGAGATGGTCTCTGTTGCCAGGTTCCCTCAGGTTTCCATCTCCGGGACTCTGTCCCTGACCCTGCGAGGCTCTCTCACAGGTGCCTTCTCTATTTCTGTTTCTGATTTCTAAAACTCCGCTAGCATGTCAGGAAAAACCAGCAAAGACACACGCCTGGCGGCCGGCAGTGTTTCCTATCTCTGACCACACAGGTTAGGGCCTGACCTGGACCCAGGGCAGTGGCGCGGGGACTTGGACTCGGCACATCGGGGCCGTCACGAAAGGGTTGGGAAGCGATTAGCCATCCGGTTCTCATAATGCCTGTTCGAAATTATTTCTGTGCCCTTGGTTAGAAAATTCCAGATGTGCAGAGCCACGGCAAAGCCCTGCCACCACCAGCTCAGTCTGTAGCCGCTGACAGTGATTTACCGGGAAGGAGCAAGGGTGTGGAGCCGCCTCATGCAGCCCAGTTTCCATTCCACTGCCTTCTGTGTAGACAAAGACAGCTGGGGCCTCAGACTGACCGTGTGGAGAGCCCATTCAATGTCCATTCCACTGCCTCCTGTGTAGACAAAGACAGCTGGGGCCTGAGATCGACCATGTGGAGAATAAAATTTTGAATTTCTGTGTTTTCAG
Seq C2 exon
GAAAATATCTAAATGTGGTCAGAGAGTGTGGCCATGACGTCACCTGCCCGGTGGCTAAAGAGATCATCTACACGTTAAAAGAGCGGGCGTATGTGGAGCAGATCGAGAAGGCGTTTAACTACGCCAGCAAGGTGCTGCTGGACTTCCTGATGGAGGAGAAGGAGCTGGTGGCTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640:ENST00000252936:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PU(13.9=97.9)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTATGGTCGAGGAGCAC
R:
GCCACCAGCTCCTTCTCCTC
Band lengths:
318-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains