BtaINT0155875 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106156869-106157652:-
Coord C1 exon
chr11:106157586-106157652
Coord A exon
chr11:106157131-106157585
Coord C2 exon
chr11:106156869-106157130
Length
455 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CACGACCTGCTCGTCTCCAGGGG
3' ss Score
7.64
Exon sequences
Seq C1 exon
CCTGCCTGGCAGCGCAGAGCCTCCAGCCATCTGTGAGATCTCCCCCTTGGTGTCATACGCTGGAGAG
Seq A exon
GTGAGAGCCGACCGGCGGCGGGGGCTCTGCTGGGGTTGGGGTGGCGGGGTTGGACGGGGCAGGCTGAGCTGGACGCTTGGCTGGGAAGTCACAGCTCTGCCACGGTCAACTGGCAGGGTCAGCGGTCCCTCAGTGGCAGAGGACTGTCCAAGACCTGGGGTGCAGTGAGCTGTCAGAAGCCTGGAGGGGCTGGGGAAGGCAAAGCAGGTCCATCTGAGCCTGGGGTTTGGGCTAGTGGGAGCCTCTCAGTGGGAGGACAGCCCGCTGTGCCTCCCGTGGGCAGTTCTGGCCAGCCCTATGGGAGGGCTGCACAGGCCCGGGAGCTCGAGGTGGCATCCAGCCCTCGCTCCTAGCAACCTCTCTGGCCCTGCCTCTCACTGGCTCCGGGCTGACTTGGGGCCTCACCCAGTGGACCAGGAGGTGGGATCCGGTCATCACGACCTGCTCGTCTCCAG
Seq C2 exon
GGGCTGGAGAAGTACCTGCGAGGCCGCGAGTTCCGGCCCCCACTCATCCTGGACGAGGCCATGGCCAGGGAGCTGCGGCCCTGACCCCTGCCAACCCTGGGGCCCAAGACTCAGGACGCAGCCCCACCTGGGCTCCAGGCAGGGGAGCTGCTCTGCGATTCTGGCTGCAGACCGGAGACCACAGAACGGAGCAGGCTTCCTCCACAAGGGTGGGAGGCCTCCCGCCACCAGGGCCCTGGGAGCCGGGTGACCCCGGGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054:ENSBTAT00000065653:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PD(0.5=8.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCAGCCATCTGTGAGAT
R:
GAGGCCTCCCACCCTTGT
Band lengths:
270-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development