DreINT0170291 @ danRer10
Intron Retention
Gene
ENSDARG00000013082 | uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1056]
Coordinates
chr5:31216617-31217242:+
Coord C1 exon
chr5:31216617-31216683
Coord A exon
chr5:31216684-31217058
Coord C2 exon
chr5:31217059-31217242
Length
375 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TTAATTGCTGTGTTTTTCAGGGT
3' ss Score
10.78
Exon sequences
Seq C1 exon
TACTGCGCAGAATGAAGACCCACCAGCTGTCTGTGAAATCTCTCCACTCGTATCATACTTTGGCGAG
Seq A exon
GTAAAAACTCAAATACTTTTATTGTTGTTGTGGTTTTTGTCAATTTAGAATTGATAATACTGATGAAAAGTCTAGTTTTGTGTCTAAGAGACCTACATCTGACACAAAAGCTAAACATTTTTAACAGAATACCAATTTTTTAGAGTTAGTACAAAAAGAGGCAAGATTAGCCCTGAGGCACAGAGTGAAAAAGGGCAACTAGCATGTGTGAACATATGGAGCATGATGTGAACTGGAGCGGATGATGTTAAAGCAGTGTTACTGTTCTCAGGAGAGAGCGTTAGAGACAGCTGCAACGCCACATCTCTTTCTATCCTTTTTTTCATTCTTAGCCTCAGTGACGCATGGATGTATATTAATTGCTGTGTTTTTCAG
Seq C2 exon
GGTCTGGAAATGCTGCTAAATCAGAAGAACTTGAAGTCGCCTTTTATACTTGATGAGAATGAAGCCAAAAATCTTGTGCAAACAGTATAATGTTTTTAGCTGAGGATTATGCATGGTAGATTTTTGACAGTAAAGGAAATTAAAGGGATGTTTGCAAATCAACAATAAATACATAAACTAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013082:ENSDART00000023463:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCGCAGAATGAAGACCC
R:
TGTTGATTTGCAAACATCCCTT
Band lengths:
231-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]