Special

HsaINT0175992 @ hg19

Intron Retention

Gene
ENSG00000197355 | UAP1L1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:HGNC Symbol;Acc:28082]
Coordinates
chr9:139976450-139978990:+
Coord C1 exon
chr9:139976450-139976516
Coord A exon
chr9:139976517-139977088
Coord C2 exon
chr9:139977089-139978990
Length
572 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGTCCCCTGCTCGTCTCCAGGGT
3' ss Score
9.84
Exon sequences
Seq C1 exon
CTTGCCCCCAAATGGAGACCCTCCGGCCATCTGTGAGATATCGCCCTTGGTGTCTTACTCTGGAGAG
Seq A exon
GTGAGAGCTGCCCATCCCTATCTGGGGCTTTTCTGGTGTCAGGTTTGGAATACCATCTGGGGAGAGGTGGCTGCTCGGGTGGAGACGGCACAGCTCTACCTCGGTTAACCAATGGGGTCGGTGGTTTAAATTTGCAGAAGACTTTCCAAGATATGGGTTGGGGTGGGGTGAGGCATCCAGAGGCCTTTGCAGGTCCTGGGAGGGCATGGGGATGAGACAGCCCAGGTCTGAGCCCAGTGTGGGGCCAGTCAGGCCTTGGTGGGGGCCTTGCGGAGGGAGGACACCGGCCTCTGCTACCTCCCTGACCTCGGCTGCCCTTGCCCCTTTCTCTGGTCAGGTCAGACCTGTGCGTGACAGGAGGGTCCCCTGCTGGCCTAGGGTCTTGAGTGTGGTCTTGGGTGGCCTTGCAGTGTGTGTCTGCTCCTGGCCCTGGAAGCCTTTCTGTCCCCACCCCTCCCTGACTCCAGGCAGACCTGGGATCGCACCTGGGGACTGTGGCTCTTGGTGTGGCCAGAGGGGCTGTGACCCGCCAAAAGGTGGGTACTTGGCCATTGTCCCCTGCTCGTCTCCAG
Seq C2 exon
GGTTTAGAAGTGTACCTGCAAGGCCGGGAGTTCCAGTCCCCGCTCATCCTGGATGAAGACCAGGCCAGGGAGCCGCAGCTGCAGGAGTCCTGACCCGCCCAGACTGTCCCCAGACTCCCCCGAGACCTGCCAGCCCCGGCATCCTGGAAGTCCCGACTCCCCCCAGACCTGCCAGCCCCGGCGTCCTGGAGCTGGGGGCTACAGCCCAGCCTGAGCTCTGGGTGGGAAAGCAGCCTGCCCCATGCTTCCAGCCTGCAGAACACAGAATGAAACATGCTGGTAGACTCCACGAGGGCAGGGCCTCTCCTGTCGCCTCTGGACACAAGTGGCGACAGCCTGCTGGGGGCTCTGTGGCTCCATTCCTGGCTGTGGGGTCTAGTCAAGAGGCAGAGGGACTTGGGACCTGGGAGAATGGGGCTGAGAGGAGGCTTCGGGTTGGGGCCCAAGGGAGGTGTGGTGTCATCTGGGGAGAACAGGAGGGCATGTCCCTTTGGGAGCCCGCCTTGTGGATCCACCACACCCCACCGAGCACTAGAAGCTGCATAAGCTACACAGGATGTGCTTCTGCAGCCTACAGATGCAGAACCAGAATGAGGGGGACAATTCCACCCACTCGAGGGCTGCCCCCTCTTCCTTAGCAGACGAACCAGTAATGGGGGCAAGGCTGGGGCATCCCAGCCCACACACCCTGGATGCCCAGCAAGGCCACAGAAAGAGCCTGATGTCCATGATCCAGGTGGCTCTGAGAAGCTTGGCCTGGACACCTGAGCCTGCGGCCGGTACTCCTGCCTTCTCCCCATCTATCCCCAAGGCCTCTGCCTCTCAGCCTCTTCCATGGTCGGTTTAGGCTGCTGAGTTTTCTGTGCTTCCCCAAGAACCAGTGGGATCAATGCCGGCGGCCTCTGTGATGGTTGCTGACTAATCCGGGATTTCATGAGTCAGAGGCACCACCCCTCACCCCAGCTGCCTGCTGCTTCTGACGGATCTTGGTGCTCAGGCTGCCTGGCTCTCCGAGTGAGGACGCAGCCTCCATATTTGGTGCACTCAGGCATGGCTGGGACAAGCCAGCTGCCCCAGGGTTCTTCCCCTGGTGATTCTCGCCTGCTTTCTCATCTCAGGGGAGGCAGTGGCACCTCCCTCTCCCTGCTGACATGAAGAGAGCTATGATATGCCACTGCTGCCAACTCATCCTCTGCCCCCACCTCGAAACCCACAGTCCCCAGTGGAGGGCCACTACTCATCCCCATTGGTTTCCCAGGGGAGGGGTGTTGTCTGGAAGGGCAGGTTCAGATGCAGCCTTCCAGATTTAGAGGCACTGGGAGGACAGTGGCTGAGTGGAGGCGCCCAGACCTGGGCAGGCAGCAGGCTCAGGCCCACACCTTGTGATTTTTGAAACCAAAGCCCAGAAGATGATGTTTACTTCTCTCTCCCTGGCTCTGCCCTTCTTACTGCAAACCATGCTGTGCCTTAGGGCCCTTCTCATAGCTGTTCCTCATGGCCATGACTGGAACAGGGATGCAACCTCTTTCTACACAAGCACAGTTAGTTGGGTGAAGTCTTTTTTTTTGTTTGTTTTAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGAAGTGGCGTGACCTTGGCTCACTGCAACCTCCAGGCCAGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCACCCACTACCACGCCTGGCTAATTCTTTGTATTTTTAGTAGAGATGGGGTTTGACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCGCGCCGGGCCGGTTGCTGGCATCTTAATGTTCTGTAGGTGGAATATTTCCAATAAACACAAGGTGCCGTAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197355-UAP1L1:NM_207309:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.174 A=NA C2=0.500
Domain overlap (PFAM):

C1:
PF0170413=UDPGP=PD(2.0=26.1)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGGCCATCTGTGAGATA
R:
CCTCGTGGAGTCTACCAGCAT
Band lengths:
342-914
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains