HsaINT0175992 @ hg19
Intron Retention
Gene
ENSG00000197355 | UAP1L1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:HGNC Symbol;Acc:28082]
Coordinates
chr9:139976450-139978990:+
Coord C1 exon
chr9:139976450-139976516
Coord A exon
chr9:139976517-139977088
Coord C2 exon
chr9:139977089-139978990
Length
572 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGTCCCCTGCTCGTCTCCAGGGT
3' ss Score
9.84
Exon sequences
Seq C1 exon
CTTGCCCCCAAATGGAGACCCTCCGGCCATCTGTGAGATATCGCCCTTGGTGTCTTACTCTGGAGAG
Seq A exon
GTGAGAGCTGCCCATCCCTATCTGGGGCTTTTCTGGTGTCAGGTTTGGAATACCATCTGGGGAGAGGTGGCTGCTCGGGTGGAGACGGCACAGCTCTACCTCGGTTAACCAATGGGGTCGGTGGTTTAAATTTGCAGAAGACTTTCCAAGATATGGGTTGGGGTGGGGTGAGGCATCCAGAGGCCTTTGCAGGTCCTGGGAGGGCATGGGGATGAGACAGCCCAGGTCTGAGCCCAGTGTGGGGCCAGTCAGGCCTTGGTGGGGGCCTTGCGGAGGGAGGACACCGGCCTCTGCTACCTCCCTGACCTCGGCTGCCCTTGCCCCTTTCTCTGGTCAGGTCAGACCTGTGCGTGACAGGAGGGTCCCCTGCTGGCCTAGGGTCTTGAGTGTGGTCTTGGGTGGCCTTGCAGTGTGTGTCTGCTCCTGGCCCTGGAAGCCTTTCTGTCCCCACCCCTCCCTGACTCCAGGCAGACCTGGGATCGCACCTGGGGACTGTGGCTCTTGGTGTGGCCAGAGGGGCTGTGACCCGCCAAAAGGTGGGTACTTGGCCATTGTCCCCTGCTCGTCTCCAG
Seq C2 exon
GGTTTAGAAGTGTACCTGCAAGGCCGGGAGTTCCAGTCCCCGCTCATCCTGGATGAAGACCAGGCCAGGGAGCCGCAGCTGCAGGAGTCCTGACCCGCCCAGACTGTCCCCAGACTCCCCCGAGACCTGCCAGCCCCGGCATCCTGGAAGTCCCGACTCCCCCCAGACCTGCCAGCCCCGGCGTCCTGGAGCTGGGGGCTACAGCCCAGCCTGAGCTCTGGGTGGGAAAGCAGCCTGCCCCATGCTTCCAGCCTGCAGAACACAGAATGAAACATGCTGGTAGACTCCACGAGGGCAGGGCCTCTCCTGTCGCCTCTGGACACAAGTGGCGACAGCCTGCTGGGGGCTCTGTGGCTCCATTCCTGGCTGTGGGGTCTAGTCAAGAGGCAGAGGGACTTGGGACCTGGGAGAATGGGGCTGAGAGGAGGCTTCGGGTTGGGGCCCAAGGGAGGTGTGGTGTCATCTGGGGAGAACAGGAGGGCATGTCCCTTTGGGAGCCCGCCTTGTGGATCCACCACACCCCACCGAGCACTAGAAGCTGCATAAGCTACACAGGATGTGCTTCTGCAGCCTACAGATGCAGAACCAGAATGAGGGGGACAATTCCACCCACTCGAGGGCTGCCCCCTCTTCCTTAGCAGACGAACCAGTAATGGGGGCAAGGCTGGGGCATCCCAGCCCACACACCCTGGATGCCCAGCAAGGCCACAGAAAGAGCCTGATGTCCATGATCCAGGTGGCTCTGAGAAGCTTGGCCTGGACACCTGAGCCTGCGGCCGGTACTCCTGCCTTCTCCCCATCTATCCCCAAGGCCTCTGCCTCTCAGCCTCTTCCATGGTCGGTTTAGGCTGCTGAGTTTTCTGTGCTTCCCCAAGAACCAGTGGGATCAATGCCGGCGGCCTCTGTGATGGTTGCTGACTAATCCGGGATTTCATGAGTCAGAGGCACCACCCCTCACCCCAGCTGCCTGCTGCTTCTGACGGATCTTGGTGCTCAGGCTGCCTGGCTCTCCGAGTGAGGACGCAGCCTCCATATTTGGTGCACTCAGGCATGGCTGGGACAAGCCAGCTGCCCCAGGGTTCTTCCCCTGGTGATTCTCGCCTGCTTTCTCATCTCAGGGGAGGCAGTGGCACCTCCCTCTCCCTGCTGACATGAAGAGAGCTATGATATGCCACTGCTGCCAACTCATCCTCTGCCCCCACCTCGAAACCCACAGTCCCCAGTGGAGGGCCACTACTCATCCCCATTGGTTTCCCAGGGGAGGGGTGTTGTCTGGAAGGGCAGGTTCAGATGCAGCCTTCCAGATTTAGAGGCACTGGGAGGACAGTGGCTGAGTGGAGGCGCCCAGACCTGGGCAGGCAGCAGGCTCAGGCCCACACCTTGTGATTTTTGAAACCAAAGCCCAGAAGATGATGTTTACTTCTCTCTCCCTGGCTCTGCCCTTCTTACTGCAAACCATGCTGTGCCTTAGGGCCCTTCTCATAGCTGTTCCTCATGGCCATGACTGGAACAGGGATGCAACCTCTTTCTACACAAGCACAGTTAGTTGGGTGAAGTCTTTTTTTTTGTTTGTTTTAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGAAGTGGCGTGACCTTGGCTCACTGCAACCTCCAGGCCAGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCACCCACTACCACGCCTGGCTAATTCTTTGTATTTTTAGTAGAGATGGGGTTTGACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCGCGCCGGGCCGGTTGCTGGCATCTTAATGTTCTGTAGGTGGAATATTTCCAATAAACACAAGGTGCCGTAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197355-UAP1L1:NM_207309:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PD(2.0=26.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGGCCATCTGTGAGATA
R:
CCTCGTGGAGTCTACCAGCAT
Band lengths:
342-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)