GgaINT0125123 @ galGal4
Intron Retention
Gene
ENSGALG00000009090 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr17:355900-356723:-
Coord C1 exon
chr17:356657-356723
Coord A exon
chr17:355972-356656
Coord C2 exon
chr17:355900-355971
Length
685 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CGATTTTCACGCGTTCTCAGGGT
3' ss Score
8.41
Exon sequences
Seq C1 exon
TCTTTCAGGAACCGAAGATCCTCCGGCTGTGTGTGAGATTTCTCCATTAGTATCTTACTTTGGAGAG
Seq A exon
GTGAGAATAATTATCTGTGGTGGTAAAACTTTTAAGAGTATGCAGGAATACATCTGATTTCTTTACAGAAATGAGATTTCTTTAGCCTGTGCTTGCTCAGAAGTGATAAGGTAAAGGGAGCTAGGATTTGTGTTATATTTGTAGTTCCACTCTGGCTCATTCTTGAGCGGTTTGCTTGGCCTTCACATATCTCGGTTTCAGCAGTTTCTAAAATGAGAGATGTAATGAGGTGGTGAAGTTTCGTTAGGACTCATTTGTACGTTGAGATCCACTGAATGAATACCTTTACATCTTCGCTAAGTTCCTGCCTGCAGGTAGCTGGCTCACCACAGGTGGTGCCTTATAAGAATCAAACAAAGGTGAGACAACGTGACTTTCTTTGCTAGGATTGTTCCAGTATGAGTTCAGGACACACCTGCCCTGTGCCTCACCCTCCTCAGCGGGGCTTGTTCCTGAGCTCCACTGTTTTACAGTTCATCTGTGCCTCTCCTTCACAAACTCTGGTCATATGGCTGAAGTGCTTTCTGCTCTCACTGGGGAACAGTTGCTGTTGTCTGTCCTTTGTGTGGCCCTTTACCTTTGGGAGTCAGTCATTCTTTGTACACGTTACAGAGACTTTGAAGCAGTACACATGACCAATCTGATGTGTTTACAGCCTAACCTTACGATTTTCACGCGTTCTCAG
Seq C2 exon
GGTCTGGAGGCGTACATGAAGAACAAAGACTTCTGTTCTCCCTTTATACTCGACGAAGACAAAGCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090:ENSGALT00000034191:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=PD(1.0=17.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]