BtaINT0155877 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90839349-90839803:+
Coord C1 exon
chrX:90839349-90839495
Coord A exon
chrX:90839496-90839626
Coord C2 exon
chrX:90839627-90839803
Length
131 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
GGTTCCTTTGGCCCCACTAGGAG
3' ss Score
5.34
Exon sequences
Seq C1 exon
AAATCCTTGCCAGCCTCCCTAGCAGAGCCTGACTTTGTGATGACAGACTTCGCCAAGTATTCCCGCCCTGCCCAGCTACACATTGGCTTCCAGGCCCTGCACCATTTCTGTGCTCAGCATGGCCGGTCCCCTCGGCCCCACAATGAG
Seq A exon
GTGCGTGTGGGTGAGCCAAGCCAGGGCAGATGACCTTAGCACTGCAGGCCTGTTCTGCCCCTCTGTCTACACCTCTCACCCCCGACACAGTGACCTAACAAGCGTGCTCTTGGTTCCTTTGGCCCCACTAG
Seq C2 exon
GAGGATGCAGCAGAGCTGGTGACCATAGCCCAGGCTGTGAACGCTCGATCCCTGCCCGCAGTGCAGCAGGGCAGCCTGGATGAGGACCTCATCCGGAAGCTAGCATATGTGGCTGCTGGGGACCTGGCTCCCATAAATGCCTTCATTGGGGGCCTTGCTGCCCAGGAGGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCTTGCCAGCCTCCCTA
R:
ATGCTAGCTTCCGGATGAGGT
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]