DreINT0170293 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20726567-20727691:+
Coord C1 exon
chr23:20726567-20726713
Coord A exon
chr23:20726714-20727514
Coord C2 exon
chr23:20727515-20727691
Length
801 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CTCTGTCTGTCCTATTGCAGGCA
3' ss Score
11.29
Exon sequences
Seq C1 exon
AAATCCCTGTCCTCCTCCATGGCCGAACCAGAGTTCTTGCTGACTGATTTTGCCAAATTTGATCGTCCAGGCCAACTCCACGTGGGCTTTCAGGCACTGCATGCATTTGAGAAGAAGCACAGTCGTCTGCCAAAGCCCTGGAATCAG
Seq A exon
GTGAAGACTTTTATTTTGTCTAGCAGTATTTCTAATCATCTAGTGTATTTTCTGGATTAGTCACTTTATAGTGTCAATTGTTTTTTATTTGTTTTGTTTTTTTATCATCTGAAATAGGGTGTGATTTTTATATTCTGAAGTGTATTTTATTTGACTTGCAAATCAAGGTTTGAGTTTATCAATTCTTGATTGTGAGTGTTGCCCTAAATGTTTTACAGTTCACAGTGTTTTCTGCTATAAGTAGTTTAAAATTATTTGTTGTGTAGTCTATTCAGAAAAGAAAAAACAGCGCTCTTTCATGACACACTACTAAATTGTGATCTGTGGGCTAAAGACCCCTGCTTTAGTCTACATAATTTAGTTATATTTGCATGCAGCAAAGTATATTCATCTAGTGGAGACATTTATTTGCCCAAATTTAAATCTGAGAGCATAAAGGGTGAAAAAACAAAAATTGTATCCGAAATCCAACGATCCGAAAATGCGTGAAGTGACAAGTAGTTGACAGGCCCACAGTCATTTGTTAGCAAACATTCTTTACTCTTTATTATTAATTTTTTTTAACTAAGTATATTCACTATAATGCAAGTAATGGAAATCCCATCCCAACTAGCCATCTCTAATTCCACTCTGAACATACTGGGCTGACCAGATTTCTCTGTTCACTTAGTGTTCCACTTCCCAGTCTAATACTTTCAAGAAGTGCACTGTTGAGCTTTAATTCTACGTGAATGCTGTACTGTGGATATCAGGCTCAGTGACTCAGCAGTGATTTTTCTCTCTCTGTCTGTCCTATTGCAG
Seq C2 exon
GCAGATGCGGATGAGCTTATGACTCTGGCTGAAGAGGTGAATGCTGCACAGACAGGATCTGCCAAGCAAGAGGAGCTGGACCAGGCAGTCATAAAAAAGCTGGCCTGCGTGGCTGCTGGAGACCTGGCACCCGTCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCTGTCCTCCTCCATGG
R:
CATAACCTCCTGGGCAGCAAG
Band lengths:
320-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]