GgaINT0022370 @ galGal3
Intron Retention
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2269372-2269750:-
Coord C1 exon
chr12:2269604-2269750
Coord A exon
chr12:2269531-2269603
Coord C2 exon
chr12:2269372-2269530
Length
73 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CATTGCCCCTCTGCCCGCAGGAG
3' ss Score
11.78
Exon sequences
Seq C1 exon
GAGCCCCTCCGCCGGGCGCTGGCGATGCCCAGGATCCAGACCAGGAGCTCCACGGAGCTGCTGCGCAGCCGCACTCTGCACGCCGCCTTCTGGGCTCTGCACGCCTTCCGCCAGCAGCGGGGCCGCCTGCCCCAGCCCCGGGCACCT
Seq A exon
GTGAGTTGCTTCCCAGCCCCCCCTCCCCAGCCCGTGCCCCCCCACTGCACTGCCATTGCCCCTCTGCCCGCAG
Seq C2 exon
GAGGACGCTGAGCGTGTGCTGGAGCTGGCACGTGAGCTGGGCTCAGCGCTGGGCCCCCTGGATGAGGACGTCGTGCGGGCGTTCGCCAGCGTCAGCGCCGGGGAGCTGTGCCCGGTGGCGTCCTTCATGGGCGCGCTGGCTGCCCAGGAGGCGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF052378=MoeZ_MoeB=PU(52.5=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGACCAGGAGCTCCAC
R:
CTCATCCAGGGGGCCCAG
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]