MmuINT0168892 @ mm10
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107977329-107978022:+
Coord C1 exon
chr9:107977329-107977475
Coord A exon
chr9:107977476-107977851
Coord C2 exon
chr9:107977852-107978022
Length
376 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GCCTGAGTGCCATCCCACAGGAT
3' ss Score
6.1
Exon sequences
Seq C1 exon
AAGCCCCTGGACATAGCTCTGCTTCAGCCCCATGTGGTGGCTCAGAATACTCAGGAAGTACAGCGTGCTCACTGCCTACATCAGGCCTTCCATGTACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCATGGGATCCT
Seq A exon
GTGAGTGGCCCCACATCGCGCAATACACAGTCTCTGCCTTTCTGGGTCTCACCTTTCAGATCTCACTCCATTGGAGGCTGTGCCCATAGATGTACCAGGCCTACCGCCTGGAGATGCCTGCTTGCTCCACCCTTAAGCCATCACAAGCAGGTCGGAAGCTGTGCTCATTTGAGGATGCCTTCAGTGTCTCTGGCTGGTGTTGGACATCCTTCAGTAGCACTTCCCAGTCTAGCAGCAATGTCAGGCTTTCCCACTTAGGAATCTGCTGCTTCTGTGGAACAGGGTAGATGGGTGCCTGAAGACTTTGAGTGGAAGGTTAGAATTCAAGCTGGGGCTACTAGACCCACACATGCTATGCCTGAGTGCCATCCCACAG
Seq C2 exon
GATGATGCAGAGACTGTGGTGGAGCTGGCCCAGGACCTGGAGCCACTAAAAGGGACAGAAGAAGAGTCACTGGATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTGCTGGTACCTTAAGCCCCATGGCAGCCATTATGGGAGGAGTGGCTGCTCAGGAGGTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596:ENSMUST00000035216:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCCTGGACATAGCTCTG
R:
GACCTCCTGAGCAGCCACTC
Band lengths:
312-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types