BtaINT0156002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50993970-50994946:+
Coord C1 exon
chr22:50993970-50994113
Coord A exon
chr22:50994114-50994763
Coord C2 exon
chr22:50994764-50994946
Length
650 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
AACAGAATTCTACCCACTAGGTT
3' ss Score
3.59
Exon sequences
Seq C1 exon
GAACCCCTGGACACAGCCCTCCTTCAACCCCGTGTGGTGGCCCAGAGTGCCCAGAAAGTTCGTGCCCGCTGCCTGCATCAGTCCTTCCGCGCACTGCACAAGTTCCAGCAGCTCCATGGCCGCCCTCCCAAGCCTTGGGATCCT
Seq A exon
GTGAGTGGCCCCGATGCCCCTCTCCCTAGCCTCTGTCTTAATGGGGCCTCACCTACCAGGAGGTGACTGACTATCTTACGGATCCAAGTTTGAATCCAGAAGCAGTGTCCCACTCATATAAAGAAGATAGGATGGGCTGCAGGGAGCTGATAAATAAACACTTATCTCTAGACCAGCTGTTCTAAGTTGCTCAGTCGTGTCTGACTCTTTGTGACCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCATAGGGATTCTCCAGGCCAGAATCCTGGAGTGCGTTGCCATGCCGTCCTTCAGGGGATCTTCCCAACCCAGGGATCAAACCCAGGTCTCCTGTGTTTCAGGCAGATTCTTTACCATCTGAGCCAGCAGGGAAGCCCAGACCAGAGGCTGAGTTCATGAAGGGGCCAAGCACAAAGCCTGGGGACTCATGCCACTCCCCACCCTTCAGATCTGGTCTGGCAGCTGCTCCCAGGTTTGGGGAGCCTCCAGGGCTATTGTCTGGCACCAGGCATTGTCTAGTGGGGCCTTCCCACTCAGGCTTCTGCTTCCTCTTCTGTGGAACAGCGGGGATGGCTGCCTGAAGGATTCAAATGTGGGGTGGAGCTCAGGCTGGGTCTGCTTTAACAGAATTCTACCCACTAG
Seq C2 exon
GTTGATGCAGAGATGGTGGTGGACCTGGCCCAGGCCATGGGACCACTGAAGGGGACAGAAGGAGAGCCTCTGGAAGAGCAGCTGGATGAGGCTCTGGTGCGGACAGTTGCCCTGAGCAGTGCTGGTGGCTTGAGCCCCATGGCAGCCGTGCTGGGTGCAGTGGCTGCCCAAGAAGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCCTGGACACAGCCC
R:
CACTTCTTGGGCAGCCACTG
Band lengths:
321-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]