HsaINT0175994 @ hg38
Intron Retention
Gene
ENSG00000130985 | UBA1
Description
ubiquitin like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:HGNC:12469]
Coordinates
chrX:47202358-47202814:+
Coord C1 exon
chrX:47202358-47202504
Coord A exon
chrX:47202505-47202637
Coord C2 exon
chrX:47202638-47202814
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GGTTCTTTCTGGCCCACCAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
AAATCCTTGGTGGCCTCACTGGCAGAACCTGACTTTGTGGTGACGGACTTCGCCAAGTTTTCTCGCCCTGCCCAGCTGCACATTGGCTTCCAGGCCCTGCACCAGTTCTGTGCTCAGCATGGCCGGCCACCTCGGCCCCGCAATGAG
Seq A exon
GTGGGTGAGTGGGCGAGCCAGCCAGCGCAGACATGCCTGGCACTGCAGGCTCACCATGCCTCTCTGCGTGTCCACACTCCCTGCCCTCACTGTGGCCTGACATATCCTCTCTTGGTTCTTTCTGGCCCACCAG
Seq C2 exon
GAGGATGCAGCAGAACTGGTAGCCTTAGCACAGGCTGTGAATGCTCGAGCCCTGCCAGCAGTGCAGCAAAATAACCTGGACGAGGACCTCATCCGGAAGCTGGCATATGTGGCTGCTGGGGATCTGGCACCCATAAACGCCTTCATTGGGGGCCTGGCTGCCCAGGAAGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130985:ENST00000335972:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACTTTGTGGTGACGGAC
R:
AGATCCCCAGCAGCCACATAT
Band lengths:
245-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains