BtaINT0155882 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90842360-90842858:+
Coord C1 exon
chrX:90842360-90842525
Coord A exon
chrX:90842526-90842661
Coord C2 exon
chrX:90842662-90842858
Length
136 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GTTGTGACCCCACCCCCCAGGCA
3' ss Score
6.57
Exon sequences
Seq C1 exon
AAATTAAAGTCTGACACAGCTGCTGCAGCTGTGCGCCAGATGAATCCTCATATCCGAGTGACAAGCCACCAGAACCGTGTAGGTCCTGACACTGAGCGCATCTATGATGATGATTTCTTCCAAAACCTGGATGGTGTAACCAATGCCCTGGATAATGTGGATGCCC
Seq A exon
GTGAGTTTGGAGGCGGGTGAGGAGGTCAGGGGCCAATGCGTGCGCACGTGTGTGTGTATGTTTTGGAGGTGTCTGTCTTCCTGCCTCCTAATGTTCTGTCTTGCCACTCATGTTATGTTGTGACCCCACCCCCCAG
Seq C2 exon
GCATGTACATGGACCGCCGCTGCGTGTACTACCGTAAGCCACTGCTGGAGTCGGGCACACTGGGCACCAAGGGCAACGTGCAGGTGGTGATCCCCTTCCTAACAGAATCTTACAGCTCCAGCCAGGACCCGCCTGAAAAGTCCATCCCCATCTGCACACTGAAGAACTTCCCCAATGCCATCGAGCACACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(37.9=100)
A:
NA
C2:
PF0089916=ThiF=PD(20.7=45.5),PF105854=UBA_e1_thiolCys=PU(73.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGACACTGAGCGCATCTA
R:
TCTTCAGTGTGCAGATGGGGA
Band lengths:
248-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]