RnoINT0158924 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1729687-1730287:-
Coord C1 exon
chrX:1730122-1730287
Coord A exon
chrX:1729884-1730121
Coord C2 exon
chrX:1729687-1729883
Length
238 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TCCCCAACCCCATCATACAGGGA
3' ss Score
5.65
Exon sequences
Seq C1 exon
AAGTTAAAGTCTGACACGGCCGCTGCAGCTGTGCGACAGATGAATCCTTACATCCAGGTGACAAGCCACCAGAACCGTGTAGGCCCTGACACGGAGCGCATCTATGATGATGATTTTTTCCAAAATTTGGATGGTGTGGCCAATGCACTGGACAATGTAGATGCCC
Seq A exon
GTAAGTTCTGAAGGCTGGTAAAGAAGGCAAGAGTGAGAATTTGGGTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGTCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGAATTTGGGTTTTCTTGTTCTTTCCCAATATGCCTTTCCTTGTCTCAAGACTCTCACATCCTTGTCCCCAACCCCATCATACAG
Seq C2 exon
GGATGTACATGGATCGCCGCTGTGTGTACTATCGGAAGCCACTGCTAGAGTCTGGCACACTGGGCACAAAGGGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAATCATACAGCTCTAGCCAGGACCCACCAGAGAAATCCATCCCCATTTGTACCCTGAAAAACTTTCCCAATGCCATCGAACACACTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(37.9=100)
A:
NA
C2:
PF0089916=ThiF=PD(20.7=45.5),PF105854=UBA_e1_thiolCys=PU(73.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCACCAGAACCGTGTAG
R:
GTGTGTTCGATGGCATTGGGA
Band lengths:
295-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]