BtaINT0155886 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90846366-90846749:+
Coord C1 exon
chrX:90846366-90846440
Coord A exon
chrX:90846441-90846559
Coord C2 exon
chrX:90846560-90846749
Length
119 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TGGGCCCTGCCTTCTCCCAGCCC
3' ss Score
6.75
Exon sequences
Seq C1 exon
CTCACAAGCTCAGGAGCTCCATTCTGGTCTGGGCCCAAACGCTGTCCACACCCACTCACCTTTGATGTCAGCAAT
Seq A exon
GTAAGTCTCCTCCTTGGGGTCTCCTAGGGTCAAGTGGAGAGTGGGTGGGAGGGAAGGAGGCCGAGACGCCCCAGGTGAGGGCAGACGTGCTCACCCTTCTGGGCCCTGCCTTCTCCCAG
Seq C2 exon
CCCCTCCATCTGGACTACGTGATAGCTGCTGCCAACCTGTTCGCCCAGACCTACGGGCTGACAGGCTCTCAGGACCGAGCTGCTGTGGCCACACTCCTACAGTCTGTGCAGGTCCCCGAGTTCACCCCCAAGTCTGGAGTCAAGATCCATGTCTCTGACCAGGAGCTGCAGAGCGCCAATGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(7.4=20.0)
A:
NA
C2:
PF0213416=UBACT=PD(89.7=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTCCATTCTGGTCTGG
R:
CACAGAGGCATTGGCGCTC
Band lengths:
253-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]