MmuINT0168775 @ mm9
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20256517-20256908:+
Coord C1 exon
chrX:20256517-20256591
Coord A exon
chrX:20256592-20256718
Coord C2 exon
chrX:20256719-20256908
Length
127 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CATGCCCTGCCTTCCTCTAGACA
3' ss Score
9.85
Exon sequences
Seq C1 exon
CTCACCAGCTCAGGGGCCCCTTTCTGGTCTGGACCCAAACGCTGTCCACACCCACTTACTTTTGATGTTAACAAT
Seq A exon
GTAAGTCTTCTTACTGGGTTTTCCTGGGGTCAAATACAGAGAAGATGGACAGGTGGGAAGGAGGTGGTGGCTTTCCATCCAAGGGAAGACGTGTTAACCCTACCATGCATGCCCTGCCTTCCTCTAG
Seq C2 exon
ACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTATGGGTTGACTGGATCCCAAGACCGAGCTGCTGTGGCCTCACTCCTGCAGTCAGTACAAGTCCCAGAGTTCACCCCCAAGTCTGGTGTCAAGATTCATGTTTCTGACCAGGAGTTGCAGAGTGCCAATGCCTCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-Uba1:NM_001136085:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(7.4=20.0)
A:
NA
C2:
PF0213416=UBACT=PD(89.7=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCTTTCTGGTCTGGA
R:
CAACAGAGGCATTGGCACTCT
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: