RnoINT0158928 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1726106-1726491:-
Coord C1 exon
chrX:1726417-1726491
Coord A exon
chrX:1726296-1726416
Coord C2 exon
chrX:1726106-1726295
Length
121 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CATGCCCTGCCTTTGCCTAGACA
3' ss Score
6.61
Exon sequences
Seq C1 exon
CTCACCAGCTCAGGGGCCCCTTTCTGGTCTGGACCCAAACGATGTCCACACCCACTTACTTTTGATGTTAACAAT
Seq A exon
GTAAGTCTTCTTATTGGATTTTCCTGGGGTCATATAGAAAGGATGGGTAGGTGGGAAGGAGGTGGTGGCTTCCTGTCTAAGGGCAGATGTGTTAACCCTACCATGCCCTGCCTTTGCCTAG
Seq C2 exon
ACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTATGGGTTGACTGGCTCCCAAGACCGAGCTGCTGTGGCCTCACTCCTACAGTCAGTACAAGTTCCAGAGTTCACCCCCAAGTCTGGTGTCAAGATCCATGTTTCTGACCAGGAGTTGCAGAGCGCCAATGCCTCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(7.4=20.0)
A:
NA
C2:
PF0213416=UBACT=PD(89.7=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCTTTCTGGTCTGGA
R:
AACAGAGGCATTGGCGCTC
Band lengths:
250-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]