BtaINT0155900 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90839131-90839495:+
Coord C1 exon
chrX:90839131-90839228
Coord A exon
chrX:90839229-90839348
Coord C2 exon
chrX:90839349-90839495
Length
120 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TGATGCCCTGCTTCCCACAGAAA
3' ss Score
9.36
Exon sequences
Seq C1 exon
GTCCTTACACCTTTAGCATCTGTGACACCTCCAACTTCTCTGACTACATCCGCGGAGGCATCGTCAGCCAGGTCAAAGTACCCAAGAAGATCAGCTTT
Seq A exon
GTGAGTGTGAGGGGCGGTGGGCTGTGGGGGATGTGGGGGCTGGGGCTGGGTATCTCACGGTTCTCAATTCTTCTCTTCTGATTCTTTTTTTTTTTTTTCCTGATGCCCTGCTTCCCACAG
Seq C2 exon
AAATCCTTGCCAGCCTCCCTAGCAGAGCCTGACTTTGTGATGACAGACTTCGCCAAGTATTCCCGCCCTGCCCAGCTACACATTGGCTTCCAGGCCCTGCACCATTTCTGTGCTCAGCATGGCCGGTCCCCTCGGCCCCACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACACCTTTAGCATCTGTGACA
R:
CTCATTGTGGGGCCGAGGG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]