RnoINT0158942 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1733657-1734135:-
Coord C1 exon
chrX:1734038-1734135
Coord A exon
chrX:1733804-1734037
Coord C2 exon
chrX:1733657-1733803
Length
234 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TATATGCTGCCTTCCCACAGAAA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTCCTTATACTTTTAGTATCTGTGACACCTCCAACTTCTCTGACTACATCCGTGGAGGCATCGTCAGCCAGGTCAAAGTACCTAAAAAGATTAGCTTT
Seq A exon
GTGAGTATTGGTTCATGGCAGGTGGTTCTAGAACAGTGAGTAGTTCTCAACCTTCCTAATGCTGTGACCCTTTAATACATACAATTCCTTGTATTGTGGTGACCCCAACCATAAAATTATTTTCATTGCTACTGTTATGAAATGTAGTATAAATATTTTGCCAGAGGTGTGTGCCTCATACAGTTCTAAATTTACTATTCATTTCTTCTCTTTTTATATGCTGCCTTCCCACAG
Seq C2 exon
AAATCCTTGCCAGCATCACTGGCAGAGCCTGACTTTGTGATGACTGACTTTGCCAAGTATTCTCGCCCTGCCCAACTGCACATTGGCTTTCAAGCTCTGCACCAATTCTGTGCTCAGCACAACCGACCACCTCGACCACGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTAGTATCTGTGACACCTCCA
R:
CTCATTTCGTGGTCGAGGTGG
Band lengths:
237-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]