DreINT0170316 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20726388-20726713:+
Coord C1 exon
chr23:20726388-20726485
Coord A exon
chr23:20726486-20726566
Coord C2 exon
chr23:20726567-20726713
Length
81 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CGCACTTCTTTCTTCACCAGAAA
3' ss Score
8.69
Exon sequences
Seq C1 exon
GTCCTTACACTTTCAGCATCTGTGACACCAGCTCATTCTCTGACTATGTGAGAGGTGGTATTGTCACACAAGTGAAGATGCCCAAGAAGATTGCCTTT
Seq A exon
GTAAGTTGATTCCCTGGCTGAGATTGTTGATAATAAATTAAATCCCCTGCTGGATTTTAAACGCACTTCTTTCTTCACCAG
Seq C2 exon
AAATCCCTGTCCTCCTCCATGGCCGAACCAGAGTTCTTGCTGACTGATTTTGCCAAATTTGATCGTCCAGGCCAACTCCACGTGGGCTTTCAGGCACTGCATGCATTTGAGAAGAAGCACAGTCGTCTGCCAAAGCCCTGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCATCTGTGACACCAGC
R:
CTGAAAGCCCACGTGGAGTTG
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]