GgaINT0022369 @ galGal3
Intron Retention
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2269604-2269937:-
Coord C1 exon
chr12:2269840-2269937
Coord A exon
chr12:2269751-2269839
Coord C2 exon
chr12:2269604-2269750
Length
89 bp
Sequences
Splice sites
5' ss Seq
TATGTACGT
5' ss Score
3.41
3' ss Seq
TCCCCGTGCTGTGTCAGCAGGAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
ATGCCTTCAGGTTGGAGATCGGTGACACAAGCGCCTTCTCGCCATACCGTGGGGGGGGGCGGATCTCGGAGGTGCGGCCCCGCCAGGAGCGCTCGTAT
Seq A exon
GTACGTGCCCCTGCGCCACGGCAGTGCCACCCCCAGCGGCAGCCCCGTGCCCCCACCGTGTCCCCACGGTCCCCGTGCTGTGTCAGCAG
Seq C2 exon
GAGCCCCTCCGCCGGGCGCTGGCGATGCCCAGGATCCAGACCAGGAGCTCCACGGAGCTGCTGCGCAGCCGCACTCTGCACGCCGCCTTCTGGGCTCTGCACGCCTTCCGCCAGCAGCGGGGCCGCCTGCCCCAGCCCCGGGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACACAAGCGCCTTCTC
R:
GCGTGCAGAGCCCAGAAG
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]