HsaINT0176121 @ hg19
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49849303-49849639:-
Coord C1 exon
chr3:49849542-49849639
Coord A exon
chr3:49849450-49849541
Coord C2 exon
chr3:49849303-49849449
Length
92 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TGAGCCAGGTGCCCTTGCAGAAG
3' ss Score
2.61
Exon sequences
Seq C1 exon
AGGATGGGTCCCTGGAGATTGGAGACACAACAACTTTCTCTCGGTACTTGCGTGGTGGGGCTATCACTGAAGTCAAGAGACCCAAGACTGTGAGACAT
Seq A exon
GTGAGTGCAAGTGCATCTGAGGTAGGGGAGCTTGGTCGCCTTGAGGGGCCCATAGCATTCTGGACTAGACCCTGAGCCAGGTGCCCTTGCAG
Seq C2 exon
AAGTCCCTGGACACAGCCCTGCTCCAGCCCCATGTGGTGGCCCAGAGCTCCCAGGAAGTTCACCATGCCCACTGCCTGCATCAGGCCTTCTGTGCACTGCACAAGTTCCAGCACCTCCATGGCCGGCCACCCCAGCCCTGGGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-UBA7:NM_003335:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGGGCTATCACTGAAGT
R:
CCATGGAGGTGCTGGAACTTG
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)