GgaINT0022368 @ galGal4
Intron Retention
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2432991-2433302:-
Coord C1 exon
chr12:2433161-2433302
Coord A exon
chr12:2433089-2433160
Coord C2 exon
chr12:2432991-2433088
Length
72 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CATCTCCTCCTGCTCCCCAGATG
3' ss Score
9.44
Exon sequences
Seq C1 exon
GGCAACCCGGGGATCGTAACCTGCGCAGGGGCAGACAAGAACCGCGGCCACCGCTTCAGTGACGGTGACCTGGTGGTGTTCTCTGGTGTGGAGGGCATGGTGGAGCTGAACAGCAGCGAGCCCTGCCCTGTACACGTGCTGG
Seq A exon
GTGAGTGCCCGCCCTGGGGGCTGTGGGGGTCCCTGGTGGTTACTGTGACGCCCATCTCCTCCTGCTCCCCAG
Seq C2 exon
ATGCCTTCAGGTTGGAGATCGGTGACACAAGCGCCTTCTCGCCATACCGTGGGGGGGGGCGGATCTCGGAGGTGCGGCCCCGCCAGGAGCGCTCGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCGGGGATCGTAACCTG
R:
TGTGTCACCGATCTCCAACCT
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]