HsaINT0176120 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49812109-49812543:-
Coord C1 exon
chr3:49812408-49812543
Coord A exon
chr3:49812207-49812407
Coord C2 exon
chr3:49812109-49812206
Length
201 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
CTAGACTGGAACTCCCTCAGAGG
3' ss Score
0.87
Exon sequences
Seq C1 exon
GGCTCCCCTGGCATTCTCACTCTGAGGAAAGGGGCCAATACCCACTACTTCCGTGATGGAGACTTGGTGACTTTCTCGGGAATTGAGGGAATGGTTGAGCTCAACGACTGTGATCCCCGGTCTATCCACGTGCGGG
Seq A exon
GTAAGCCAATCCCATTCCAATTCCAGGTGCAGGGCCCAAGCCTCCACTGGAAGTGAGCACAGCCTGGCCCTTGGGATGGGTTTTTCTCCCTCCACCTTCTACAAGGTGCAGCAAGGTCTGGGACACAGATGCAAGATAGGATGGGGTGTGGGAACTACTCAGGCTCAAGGATCATTACTGACTAGACTGGAACTCCCTCAG
Seq C2 exon
AGGATGGGTCCCTGGAGATTGGAGACACAACAACTTTCTCTCGGTACTTGCGTGGTGGGGCTATCACTGAAGTCAAGAGACCCAAGACTGTGAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCTGGCATTCTCACTCT
R:
TGTCTCACAGTCTTGGGTCTCT
Band lengths:
231-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains