BtaINT0156000 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50993252-50993885:+
Coord C1 exon
chr22:50993252-50993387
Coord A exon
chr22:50993388-50993787
Coord C2 exon
chr22:50993788-50993885
Length
400 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CTAGGCTCAATCTTCCCCAGAGG
3' ss Score
5.41
Exon sequences
Seq C1 exon
GGCTCCCCTGGCATTCTCACTCTGAGAGAAGAGGCTGGTACCCACCACTTCCACACAGGGGATTGGGTGACTTTCTCAGGCATTGAGGGCATGGTGGAGCTCAACGGCTGTGATCCTCGGCCTCTCCATGTGCGGG
Seq A exon
GTAAGTCAACCCCACTCCAGGCTCAGCACCCAGGCTCCTGTGGGGGTGGACACAGCCTGGTTTTTGGAGATAAGGTCTCTCTCTACCTTCCTCAGGGCAGAGCCACATTGAGAATTTTGTTTTGTTTTAATCATTTATTTGGCTGCCTCGGGTCTTAGTGGCAGCGTGTGGGGTCTTCCATGGCTCTAGCTGTGGCCTACGGGCTTAGTTGCTCCATGGCATTTGGGATCTTATTTCCTGACCAGGGATTGAATCTACGTCCCCTGCATCACAATGCGGATTCTTAACTAACTGGACCACCAGGGAAATCCCACCTTGAGAATGCTGAGGCAAGACAGGATGGGCTGTGGGGAGCTACTCAGGTTCAGAAGTCATGCTGACTAGGCTCAATCTTCCCCAG
Seq C2 exon
AGGACGGGACCTTGGAGATTGGCGACACAACAGCTTTCTCTTGTTACTTACGTGGCGGGGCTGTCACTGAGGTCAAGAGAGCCAAGACTGTCAGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCTGGCATTCTCACTCT
R:
GGCTGACAGTCTTGGCTCTCT
Band lengths:
230-630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]