RnoINT0159040 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116755563-116755889:+
Coord C1 exon
chr8:116755563-116755698
Coord A exon
chr8:116755699-116755791
Coord C2 exon
chr8:116755792-116755889
Length
93 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
3' ss Seq
TTAGGATGACTCTCTTGCAGAAG
3' ss Score
4.6
Exon sequences
Seq C1 exon
GGCTCCCCCGGCATTGTCACTCTGAGAGGAGGCAGCAAAAGACCTTCCTTTTATGATGGGGACTTGGTGATGTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTCATTCTCCACAGCCTGTCCGTGTGCAGA
Seq A exon
GTAAGCTAACCTTACTCCAACCACTGCCTCAACTATGCGAAAACAACTTATATTTAGGGGGTGTCATAATTTATTAGGATGACTCTCTTGCAG
Seq C2 exon
AAGATGGATCCTTGGAGATTGGAGATACAACAACTTTCTCCCGTTACTTGAGGGGTGGGGTTGTCACTGAAGTCAAGAGACCCAAGACTGTGAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAGGCAGCAAAAGACC
R:
ACAACCCCACCCCTCAAGTAA
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]