GgaINT0022368 @ galGal3
Intron Retention
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2269840-2270151:-
Coord C1 exon
chr12:2270010-2270151
Coord A exon
chr12:2269938-2270009
Coord C2 exon
chr12:2269840-2269937
Length
72 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CATCTCCTCCTGCTCCCCAGATG
3' ss Score
9.44
Exon sequences
Seq C1 exon
GGCAACCCGGGGATCGTAACCTGCGCAGGGGCAGACAAGAACCGCGGCCACCGCTTCAGTGACGGTGACCTGGTGGTGTTCTCTGGTGTGGAGGGCATGGTGGAGCTGAACAGCAGCGAGCCCTGCCCTGTACACGTGCTGG
Seq A exon
GTGAGTGCCCGCCCTGGGGGCTGTGGGGGTCCCTGGTGGTTACTGTGACGCCCATCTCCTCCTGCTCCCCAG
Seq C2 exon
ATGCCTTCAGGTTGGAGATCGGTGACACAAGCGCCTTCTCGCCATACCGTGGGGGGGGGCGGATCTCGGAGGTGCGGCCCCGCCAGGAGCGCTCGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCGGGGATCGTAACCTG
R:
TGTGTCACCGATCTCCAACCT
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]