BtaINT0156001 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50993788-50994113:+
Coord C1 exon
chr22:50993788-50993885
Coord A exon
chr22:50993886-50993969
Coord C2 exon
chr22:50993970-50994113
Length
84 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
AAACTGAATACCCTCTGCAGGAA
3' ss Score
5
Exon sequences
Seq C1 exon
AGGACGGGACCTTGGAGATTGGCGACACAACAGCTTTCTCTTGTTACTTACGTGGCGGGGCTGTCACTGAGGTCAAGAGAGCCAAGACTGTCAGCCAC
Seq A exon
GTGAGTGCAAGGTCATCTGGGGTTGGGTGCCTCGAGGGGCCCACAGTGTTCTGGACCTGACCCTAAACTGAATACCCTCTGCAG
Seq C2 exon
GAACCCCTGGACACAGCCCTCCTTCAACCCCGTGTGGTGGCCCAGAGTGCCCAGAAAGTTCGTGCCCGCTGCCTGCATCAGTCCTTCCGCGCACTGCACAAGTTCCAGCAGCTCCATGGCCGCCCTCCCAAGCCTTGGGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTTACTTACGTGGCGGGG
R:
ATGGAGCTGCTGGAACTTGTG
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]