RnoINT0159041 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116755792-116756125:+
Coord C1 exon
chr8:116755792-116755889
Coord A exon
chr8:116755890-116755978
Coord C2 exon
chr8:116755979-116756125
Length
89 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTGACCCTGGTCCCCTACAGAAG
3' ss Score
7.52
Exon sequences
Seq C1 exon
AAGATGGATCCTTGGAGATTGGAGATACAACAACTTTCTCCCGTTACTTGAGGGGTGGGGTTGTCACTGAAGTCAAGAGACCCAAGACTGTGAAGCAT
Seq A exon
GTGAGTACAAGTACATCTGTGGTGGGAGCACCTGGCTACCTGAAGGGGTGGGTGTGTCATGTCCTAGACCTGACCCTGGTCCCCTACAG
Seq C2 exon
AAGCCCCTGGACATAGCTCTGCTCCAGCCCTGCATGGTGGTCCAGAATACTCAGGAAATACAACGCGCTCACTGCCTACACCAGACCTTCCATGCACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCCTGGGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTTGAGGGGTGGGGTTGT
R:
AGTTGCTGGAACTTGTGCAGT
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]