MmuINT0168891 @ mm9
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107879462-107879806:+
Coord C1 exon
chr9:107879462-107879559
Coord A exon
chr9:107879560-107879659
Coord C2 exon
chr9:107879660-107879806
Length
100 bp
Sequences
Splice sites
5' ss Seq
CATGTGCGT
5' ss Score
5.1
3' ss Seq
GCAACCCCGACCCCCTACAGAAG
3' ss Score
3.64
Exon sequences
Seq C1 exon
AAGACGGGTCCTTGGAGATTGGAGATACGACAACTTTCTCCCGTTACTTGAGAGGTGGGGTTGTCACCGAAGTCAAGAGACCCAAGACCGTGAGGCAT
Seq A exon
GTGCGTACAAGAACACCTGGGGTGGGAGCACCTGGCTACGTGAAGGGGTGCGGAGTGTTATAGACCTGACCCTGAGCCAAGCAACCCCGACCCCCTACAG
Seq C2 exon
AAGCCCCTGGACATAGCTCTGCTTCAGCCCCATGTGGTGGCTCAGAATACTCAGGAAGTACAGCGTGCTCACTGCCTACATCAGGCCTTCCATGTACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCATGGGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-Uba7:NM_023738:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGGGTCCTTGGAGATTG
R:
GCTTGGGTAGCCGGCCAT
Band lengths:
234-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: