BtaINT0155970 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85056095-85057160:-
Coord C1 exon
chr6:85056967-85057160
Coord A exon
chr6:85056223-85056966
Coord C2 exon
chr6:85056095-85056222
Length
744 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
GATCACCTTCTTTTACCTAGGTT
3' ss Score
7.72
Exon sequences
Seq C1 exon
GTGACCTTCAGATGGCAGTGCTTTCATTTGAAAAAGATGATGATCATAATGGACACATAGATTTCATCACAGCTGCATCAAATCTTCGTGCCAAAATGTATAGTATTGAACCCGCTGACCGTTTGAAAACAAAGCGCATAGCAGGTAGAATTATACCTGCTATAGCAACATCTACTGCTGCAGTCTCTGGCTTG
Seq A exon
GTGAGATTATTATTCTGTGAAAATGTTGCTATATCATTACTTCTTTCCTGTCTTCCCTATTATACCACCCCTAAACCATTCACTCGGAGATCTTAGAGAAGGAAGGATACTTATTGACCTTATAATTTAAAATTGTAAGGTATTTCTGCAAATACAGTAATCTTGTATTTTGAACTTTTACAGATAATGCAAACATTTTTAAATAAGCTCCTTTGAGTTAGAGTATAATTTTTCTTACAAGCAATAATCCTCTTAATCATCTTTGTATCCTCCATACAATCCATGTGCCTTATTTTTCTTGAATAAAATGAACTATCCTAGACTTTGCACTTTGATAATATTAGATTTTAGTTCTTTGCCTTAAAAAAATGCTGTTCTCAATAGTGATTTGGATTTCTTTTGATTTAGTCTTTTCTTAACAATTCCTTAACAATTTAGAATCTTTAGGACCATGCTAGTTATTATACTTTAGTGTTACTCATAGACGCTATATAGTTATTGTTCCTATTATTAAATGATTTCAGACAGCTGTATTTCTTGAGTGCTGGTGTCTGCTTTCAAAATAGGAAGATTACATGGTCAGATTAATTAGACTTACAGAAATTTTTATTACTCTAGTCTAATAACTACTTTTATTCTCTACACAGAAATTCTTGAGAAGAAGTCAGGAAAATTATATACGTGCAATTAAAGTCATAGTTAGTTTTAGGCTATTATATAATCAGATCACCTTCTTTTACCTAG
Seq C2 exon
GTTGCATTGGAGATGATCAAAGTAGCTGGTGACTATCCATTTGAAGCTTACAAAAATTGTTTCCTTAACTTAGCCATTCCGATCATAGTGTTTACAGAGACATCTGAAGTAAGAAAAACTGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837:ENSBTAT00000008985:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
NA
C2:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCAGATGGCAGTGCTT
R:
TCAGTTTTTCTTACTTCAGATGTCTC
Band lengths:
314-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]