HsaINT0176090 @ hg19
Intron Retention
Gene
ENSG00000033178 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581]
Coordinates
chr4:68489844-68490905:-
Coord C1 exon
chr4:68490712-68490905
Coord A exon
chr4:68489972-68490711
Coord C2 exon
chr4:68489844-68489971
Length
740 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GATCACCTTCTTTTATCTAGGTT
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTGACCTTCAGATGGCAGTGCTTTCATTTGAAAAAGATGATGATCATAATGGACACATAGATTTCATCACAGCTGCATCAAATCTTCGTGCCAAAATGTACAGCATTGAACCAGCTGACCGTTTCAAAACAAAGCGCATAGCTGGTAAAATTATACCTGCTATAGCAACAACCACTGCTACAGTTTCTGGCTTG
Seq A exon
GTAAGTTTATTATTCCTTGAATAAAAATGCTCCTTTTTCATTGCCTCTTCCCTGACTTCCCCGTCATACCAACCCAGTCACTCAGAGATGTTAGAGAGGGAAGGATAAATATTGGATCTCATAATTTAAAATTTCAAAATATTTTCTGAAAATGCAGTCATCTGTATTGTGAAGTATTACATAAATATACATTTTTAAAATAAAAAATAAGCTCAAGATAGATTATGATTTTTCTTATAGGCAATAATCTTTTCACTGATCTTTACGTCATTCATACAAAGCAGGTACTCTGTTTTTCTTGAATAAAATGAACTTCCCTAATCTTTATTCATAATGATTCAGAATCTTTAAGTGCGGCCCTAGTTATTATACCATATTACATCATTACTCTATGTAATTATCTATGAAGCTATGTAGTTATTTACCCCTGTATTAAGTGATTTTAGACTGTTGTTATTTTTTGAGTTACAGCATGTGCTTTCAAAATAGGGAGACTGTATGGTTGAATTAATATTTTTTTAAATAACTGTTAACATGTATAGAGTAGGTTGAAAGTTTGAAAGTATAAAATATACTAAAAGTATACAGACCTGTAATAAGAAATTTATATTACTATAGTCCCATAGCTGCTTTTACTATCCACAGAGAAATGCTTGAAAACGTGAAAGTTGAATAGATGCAATTAAAATCACGGATAGTTTTAGGCTGTTTATATTATCAGATCACCTTCTTTTATCTAG
Seq C2 exon
GTTGCCTTGGAGATGATCAAAGTAACTGGTGGCTATCCATTTGAAGCTTACAAAAATTGTTTTCTTAACTTAGCCATTCCAATTGTAGTATTTACAGAGACAACTGAAGTAAGGAAAACTAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178-UBA6:NM_018227:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
NA
C2:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTCAGATGGCAGTGC
R:
TTCCTTACTTCAGTTGTCTCTGT
Band lengths:
310-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)