RnoINT0159011 @ rn6
Intron Retention
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23552326-23554126:+
Coord C1 exon
chr14:23552326-23552519
Coord A exon
chr14:23552520-23553998
Coord C2 exon
chr14:23553999-23554126
Length
1479 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
GATCACTTTCTCTTATCTAGGTT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGACCTTCAGATGGCAGTGCTTTCATTTGAAAAAGATGATGACAGTAATGGACACATAGATTTCATCACAGCTGCTTCCAACCTTCGAGCCAAGATGTATAACATTGAACCAGCTGACCGTTTTAAAACTAAACGCATAGCTGGTAAAATTATACCTGCTATAGCAACATCTACTGCTGCAGTTTCTGGCTTG
Seq A exon
GTAAGCTTACTCTTTTAAAAATGCTCTTCTTTCTTCCACATTCTACCAACCTTAGCTTACCATTCATATTTTAGAGACAAAGATAAAAAGTTGGATATTCTAATTTAAACTTTCAAGATGTTTCTGAAGATAGGATTTAGTTGTTCTTACAGTGGTCCCAATGACAGTTCTTTCCCTTCTGGGTTTGGGGCAGTGGAAAGAATGGACCCACCCCAATAGCCAGCTGAGGAACAGGGCCTGGAGCCCAGGGGACACTTCAGGATCCCCTGGAGTTTGAGTTCAGCACGCAGATATCCTGAGGTGCCAGAGTGAGCTATGGAATCTGAAAAGTACATGATTTTGAGCACTCAGAGAGAGGCAACTGGACAGGCTCAGAGAAGAAGATGCACAGAGCTGAGGGCAACAGAGGAGCACCCAAGCATCCTGTCACTTTTCCTTCCAATACTCCACAGGAATCTTGTTAGCCTCCATGCAAAGTAGGTATCTTAATATTGTAAGCACTTGGGAGTCATTACTGTGACCATTTACTATGTTGTACTCTCACTTCTCTAGAGTCAGTCAATTTACATCCTGTATTGATTGGATGTAAATTGCTTTACTTTTGTGCTGTGTGTCTGCTTTGAAAATAGGATGATTATGTGATGAAATAGCTTTGTTACTGTATGTATGTAGAATAGACTTAGCATATGTGAATCTATTCCATTTTAATTTAATTCCAATTAAAATGCCACATTAATGGAGAATTATAGAATGTGTAAACAGTCATTAATTTCTTGCTTTTTTAGATGTTGGTACAGGTTAATTAGTTAATTTCAATAATGCCATGTATGGGCTGGCTCAGAATTTTTCATGAAAGGATCACTTTTTTGCATGCTTTAGAATATATATTTATTTTAAAAAAGCTTTCAAAAAACCACTTACAAAGGTAAAACATAAAAAATGAATTTGGATAATAATTATTTTCTCTAACATTTTCAAATTCAGATGATAAAAATATTTGGGCACAAAATGACATCAAAACAAATTCGTATACTAAATTTTATCTACTAAGAAAATAAAATAATCTATTACAATTTTTATGGTATTTACCCAAGCTGTTTGCTTGTATTAAAACTTCATGTTATGCCAAACACATGTGTATATTTTTGTAACTTTTTTATGGTTTAAATTATATTTAGTATATAACTAAAGTATATTTACTTTAAAAAAAGAAAAACATGAAGTTCTTTTTAAAATATATTGAATGTTCCTTAAAAATATAGTAAATTACTGAAATAAAAATTATGAAAAAATAATAAAAGCATAAAATGTACTGAAAATATAGAGATCAGTTAAATTAGAAATGTATGTTGCGACAGTCATGTGGCTGTTCATACTAGTTTACACAGAAATGCTAGGACCTGGGAAAACAGCAAGACCAATTAAGTTCCTAAGTAGTTTTAGACTTTTCAAATAATCCGATCACTTTCTCTTATCTAG
Seq C2 exon
GTTGCCTTGGAGATGATCAAAGTAGCTGGTGGCTATCCCTTTGACGCTTACAAAAACTGTTTCCTTAATTTAGCCATTCCAATAATAGTGTTTACAGAGACATCTGAAGTAAGAAAAACTGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931:ENSRNOT00000037509:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
NA
C2:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCAGATGGCAGTGCTT
R:
TCAGTTTTTCTTACTTCAGATGTCTC
Band lengths:
314-1793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]