DreINT0022017 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19189802-19190210:+
Coord C1 exon
chr1:19189802-19189995
Coord A exon
chr1:19189996-19190082
Coord C2 exon
chr1:19190083-19190210
Length
87 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTATTATTCATTCCCTTTAGGTG
3' ss Score
11.62
Exon sequences
Seq C1 exon
AGAGACTATGTATGAGTCCGCTGTTCTTCGAAAAGGACGATGACACAAATGGACACATGGATTTTGTAGCATCAGCGTCAGCCCTGCGAGCTCGTATGTACGCCATTGAGGCCGCTGACCGACTACAAACCAAACGAATAGCTGGCAAAATCATCCCTGCGATTGCTACATCTACAGCTGCTGTCGCTGGACTG
Seq A exon
GTGAGAGTAAAAACTAAATGATTTCAGTGAATATTTGAGTGCATTGCTGTGTGGATATATGATTGCTTTATTATTCATTCCCTTTAG
Seq C2 exon
GTGTCGATGGAGTTGATTAAAATTGCTGGCGGTTATGGATTTGAGTTGTTTAAAAACTGCTTCTTCAACCTGGCCATTCCAGTTGTGGTTCTTACAGAAACAGCTCAGGTCAAGAGAACCCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(81.2=86.2)
A:
NA
C2:
PF0213416=UBACT=PD(15.9=25.6),PF093585=UBA_e1_C=PU(21.1=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGACCGACTACAAACCAA
R:
GAACCACAACTGGAATGGCCA
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]