BtaINT0155971 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85111868-85112508:-
Coord C1 exon
chr6:85112414-85112508
Coord A exon
chr6:85111897-85112413
Coord C2 exon
chr6:85111868-85111896
Length
517 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTTTTTTTCCCCCTTTATAGCAA
3' ss Score
10.51
Exon sequences
Seq C1 exon
TCGACAGAGGTATGTTCTTGGAGACACAGCAATGCAGAAGATGGCCAAGTCCCATGTTTTCTTAAGTGGTATGGGTGGTCTTGGTTTGGAAATTG
Seq A exon
GTAAGCAATATTTTTGTTCATAATTTTATATGATGCTTTTGAGCAACATAATTTAAATAATTTAATTCCTTTCCCTTGTATTATTTTCTATAAAAGAAGTTAGATCCAAAATCTTGATCAGATTCAATTTTTATTTATTATTTATTTTTTTGGCAAGACTATTTCACGTTCTTCCATGAGAAACCAGTTATGACTCTCTTGCTTCTCTTTTGGTGTTGTTAATAGCTGTAAATGATCTTTTTCTGTATCCATTAATTATGGTAGAGAGCACACACATATTCATAACAGCATGTCTGGAAGTGTACACTGAAATTTTAAGAGTGATTATCTCAGTGTGGTTTGATTATGGAAATCAAATTTTATTTTTATTCCTTTTTGTTCATCTCTATTTTCTAAGAAACTGATATTTTTAAAGTAGTAAAAGAGTTAAAATTAGTCAGAGATATGAACAGACTCCATGAAAACATATCTAATATACAATTCCTAATATTAAGCTATTTTTTTTCCCCCTTTATAG
Seq C2 exon
CAAAGAATCTTGTTCTTGCAGGGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837:ENSBTAT00000008985:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(12.2=51.5)
A:
NA
C2:
PF0089916=ThiF=FE(31.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]