RnoINT0159012 @ rn6
Intron Retention
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23513032-23513752:+
Coord C1 exon
chr14:23513032-23513126
Coord A exon
chr14:23513127-23513723
Coord C2 exon
chr14:23513724-23513752
Length
597 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTATTCTTTTTCCTTTACAGCAA
3' ss Score
12.19
Exon sequences
Seq C1 exon
TCGACAGAGATATGTTCTCGGTGACACGGCAATGCAGAAGATGGCCAAGTCCTGTGTCTTCTTAAGTGGTATGGGTGGTCTTGGAGTGGAAATTG
Seq A exon
GTAAGCAGTATTTTTTTTTCTATAATCTGTGATACTTTTGCATAAGATAAAAAGAATATTACTCTTATTATCTTTAAAGGAAATTAGCTTCCAAATATTGGCAAATTCTTTTGACAAAGTATTTTGTAGCAGAGGTCTAGTCTTCCACCAAAAACAAAGCCAGTGCTTCTTTGGTGTCCTTAATAACTTAAATGGTCATTCCTTAGGTTTGTGTTTTGTTTTGTTTTGTTTAGACAGGTCTCACCTTGTGACCCTGGCTGTCTGAGATTCAATGTGTACACCACGCTGGTGTTCAATTCACAGAAATCTGTCTGTCTGCCTCCTTGGGATTAAAGGCATGTGCCACCATGCCTGGCTAAATGATGATTCCTCCTTTATTATGGCTATGTAGTATATTTATTAAAACACGGAAATGCGTAGATATCTTTTAATGTTTTGATTATGCAAAATTGTATCAATTCACTTTTTTTTTCTACCTGTATTTTCTAACTTTCTTAAGCAAGTAAGAAAAGTTATAGTTACTCAGAAGTGTGATGAAACTACATGAATCTGTTTGGTATGAATTTACAAAGCTAAGTTATTCTTTTTCCTTTACAG
Seq C2 exon
CAAAGAATCTTGTACTTGCAGGGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931:ENSRNOT00000037509:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(12.3=51.5)
A:
NA
C2:
PF0089916=ThiF=FE(31.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]