HsaINT0176091 @ hg38
Intron Retention
Gene
ENSG00000033178 | UBA6
Description
ubiquitin like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:67681563-67682213:-
Coord C1 exon
chr4:67682119-67682213
Coord A exon
chr4:67681592-67682118
Coord C2 exon
chr4:67681563-67681591
Length
527 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTTTTCTTTTGCCTTTCTAGCAA
3' ss Score
10.61
Exon sequences
Seq C1 exon
TCGACAGAGGTACGTTCTTGGAGACACAGCAATGCAGAAGATGGCCAAGTCCCATGTTTTCTTAAGTGGGATGGGTGGTCTTGGTTTGGAAATTG
Seq A exon
GTAAGCAATATTTATATTCCTAATTTTTGACACTTTTGAGCAATGAAGATAGTTTAAATAACTTAACTTCATCCCCTTATATTTCCTATAAAGGAAGTTAGATCCAAAATGTTGATCAGATTGAGTTTTTAATCTTTGTCAAGACTATTTCGTGATGTTATATTCTTCCACAAAGAACCAATAATGACTCATTGCTTCTTTTTGTGATGTTAATAGCCATTAATTATCATTCTCTATATCCATTAATTCATTATAAGCACACATACATATACTGTATTCATAAAAACATATCTGGAAGAATACGTTGAAATTTTAGGAGTGATTATCTCTGGGTGTTGTGATTATGCACATTTTAATTTTTTCACTTTTAACCTGTATTTTGTAACTTTTTTAAGACAAGGAACTTGTATTAAGTAGTAAAAAAAGAAGTTAAAAGTATGCAGTCAGATATGTGACTAAGCTCTGTGAAGACATATCTAGTGTGTATTCCCAATATTGAGCTATTCCTTTTTCTTTTGCCTTTCTAG
Seq C2 exon
CAAAGAATCTTGTTCTTGCAGGGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178:ENST00000322244:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(12.2=51.5)
A:
NA
C2:
PF0089916=ThiF=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains