MmuINT0168861 @ mm9
Intron Retention
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86593104-86593816:-
Coord C1 exon
chr5:86593722-86593816
Coord A exon
chr5:86593133-86593721
Coord C2 exon
chr5:86593104-86593132
Length
589 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTTTTCTTTTTCCTTTACAGCAA
3' ss Score
12.91
Exon sequences
Seq C1 exon
TCGCCAGAGATATGTTCTTGGTGACACAGCAATGCAGAAGATGGCCAAGTCCTGTGTCTTCTTAAGTGGTATGGGTGGTCTTGGAGTGGAAATTG
Seq A exon
GTAAGCAGTATTTTTTTTCCTATAATTTCTATGATACTTTTGCGTAAGATAAAAAATATTACTCTTATTTTCTTTAAAGGAAATTAGCTTCCAAATATTGGTCAAATTTTTTAACAAAATATTTTGTAGCAGAGGTATGATCTTCCACCAAAAACAAAGCCAATACTTATTTGGTAACCTTAATAACTATTACATAGCATACCTTTGTTCTGTGTTTTGTTTTTTTAGTCAGGGTCTTACCATATATCCCTAGCTGTCTGAAACTCAATATGTATACCATGCTGGCCTTGAATTCAGAAAAATATCCATCTCTCTTTGTCTCCTTGGGATTAAAGGCATGTGCCACTAGACCTGGCTAAATGATGATTCTTACTTTATTATGGTTTCATAGTGTGTTCATTAAAACACTGAAAAATGAATAGATATCTTTTAACGCTTTGATTATGCAAAATTGTATCAGTTCGTATTTTCTAACTTTCTTAAACAAGTAAAAAAAGTTACAGTTACTCAGAAGTGTGATGAAACTCCATGAATCTGTTTGGTATGAATTTACAAAGCTAAGTTATTCTTTTTTCTTTTTCCTTTACAG
Seq C2 exon
CAAAGAATCTTGTTCTTGCAGGGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898-Uba6:NM_172712:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(12.2=51.5)
A:
NA
C2:
PF0089916=ThiF=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: