BtaINT0155989 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50996765-50997267:+
Coord C1 exon
chr22:50996765-50996839
Coord A exon
chr22:50996840-50997092
Coord C2 exon
chr22:50997093-50997267
Length
253 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGCTCTGGGTCTCATTGCAGGAT
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTGCAGGAGGATGGAACTCCATTCTGGTCGGGTCCCAAACAGTGTCCCCAGCCCTTGAAGTTTGATGCCAGCCAA
Seq A exon
GTGAGTGGGGTCCCTTGGCAGCCCTGAGATGGAAGTGTGGCCCCTCAGGGCAGAGGTGGGCACCTCTGTGTTTTGTAGTGATGCCGAGACGCTGAGAGGGAGACAGCCACGTCTGTGCACATGTGGGTGTCCACATGGGAGGCGGAGGCAGGCCCTCCAACAGATCTTCAAGTGGGCGGTGGCCCCTGCCCCACGCACCCACACACGCTCACTCAGGCCCATGCAGCTGCCCCTGCTCTGGGTCTCATTGCAG
Seq C2 exon
GATATGCACCTCCTTTACGTGCTGGCAGCTGCCAACTTGTATGCCCAGATGCATGGGCTGCCTGGCTCACAAGACCAGACTGCGCTCAGGGGACTACTGAATTTGCTGCCACTGCCTGACCCCCAGAACTTGGACCGCATTTTTGCTAGTGAGCTGGAGCTGGATTCGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(10.4=20.0)
A:
NA
C2:
PF0213416=UBACT=PD(85.4=69.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGGAGGATGGAACTC
R:
AGAAGGCGAATCCAGCTCCAG
Band lengths:
249-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]