MmuINT0168879 @ mm10
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107979763-107980182:+
Coord C1 exon
chr9:107979763-107979837
Coord A exon
chr9:107979838-107980028
Coord C2 exon
chr9:107980029-107980182
Length
191 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TGCTCTCTGCCTGGCTGTAGGAC
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTGCTTGAGGGTGGAACTCAGTTCTCATCAGGATCCAACAAGTGTCCACATCCCTTGCAGTTTGACCCCAACCAC
Seq A exon
GTGAGTAGTGTCAGCAGACCTGAGTATCCTGAGGGCATACGCCACCTCTGCATTCTGCATGCTAAGAGAGAGCCATGCTTGTGCAAATTCAAGTGTCTGTCCTTGAGAGAGGCAGGCATTCAGACAGATCCACAGAAGGGCAATGCATCCCATCCCGTGTACCCACGGTCCTGCTCTCTGCCTGGCTGTAG
Seq C2 exon
GACATGCATTTCCTCTACGTACTGGCAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGAACTGCTGACGCGGCTGCTAGAGTCTGATTCCAGGCCCCAGAACCTCTTCTCTGCTGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596:ENSMUST00000035216:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(11.9=20.0)
A:
NA
C2:
PF0213416=UBACT=PD(83.3=67.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTGAGGGTGGAACTCAG
R:
TGCTCAGCAGAGAAGAGGTTCT
Band lengths:
227-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types