HsaINT0176109 @ hg19
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49846409-49846897:-
Coord C1 exon
chr3:49846823-49846897
Coord A exon
chr3:49846593-49846822
Coord C2 exon
chr3:49846409-49846592
Length
230 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGCTCTTGGTCTGGCTGCAGGAC
3' ss Score
7.48
Exon sequences
Seq C1 exon
GTGCTTGAGGATGGAACTCCCTTCTGGTCAGGTCCCAAACAGTGTCCCCAGCCCTTGGAGTTTGACACCAACCAA
Seq A exon
GTGAGTGGGATTCTGTAGGGAGCTCCAAGATAGAGATGTGGCCCCTCAGAGCAGAGGTAGGCATTTCTGCATTCTGCAGAGATGCACAGATGCCCAGAGAGAGCCATGCTTGTGCATATATGGGTGTCTACATGTGAGGCAAAGGCAGGCACTCAAACAGATCCACAAATGGACAGTGACCCCCACCCCATGCACCCATGCCTCTGTTCCTGCTCTTGGTCTGGCTGCAG
Seq C2 exon
GACACACACCTCCTCTACGTACTGGCAGCTGCCAACCTGTATGCCCAGATGCATGGGCTGCCTGGCTCACAGGACTGGACTGCACTCAGGGAGCTGCTGAAGCTGCTGCCACAGCCTGACCCCCAACAGATGGCCCCCATCTTTGCTAGTAATCTAGAGCTGGCTTCGGCTTCTGCTGAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-UBA7:NM_003335:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(7.8=20.0)
A:
NA
C2:
PF0213416=UBACT=PD(89.1=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGAGGATGGAACTCCCT
R:
AAACTCAGCAGAAGCCGAAGC
Band lengths:
257-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)