BtaINT0155990 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50997093-50997854:+
Coord C1 exon
chr22:50997093-50997267
Coord A exon
chr22:50997268-50997780
Coord C2 exon
chr22:50997781-50997854
Length
513 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTCCTCCTTCTCCCAACAGGCT
3' ss Score
13.17
Exon sequences
Seq C1 exon
GATATGCACCTCCTTTACGTGCTGGCAGCTGCCAACTTGTATGCCCAGATGCATGGGCTGCCTGGCTCACAAGACCAGACTGCGCTCAGGGGACTACTGAATTTGCTGCCACTGCCTGACCCCCAGAACTTGGACCGCATTTTTGCTAGTGAGCTGGAGCTGGATTCGCCTTCTG
Seq A exon
GTGAGTTTGGTGAGGTCCCCAGCCCTGACCCCTCTATGCTGCCACCCAAAGGCCTGAGCTTCCTCAGCCTGTGCTGCAGAAAGAAGATGGGTCTGGGGGCCCTGAAGCCAAGTCACAACCTATTAAGCCCTCTCACCTTGCTTCTCTCTAGCCTTGGATTCATCCCCTGGTCCTGGAGTAGGTCCTCTCCCTCCTATTTACCATCCTCCCCACCCATTCCCTTGGCCAACTCTCAGCAAAGGAAAAAAACCCGCAAACCACTGGGCCCTGGGGAGCAACTAGCTGTGGCTCCCCAGATGAGGACAGGGTCACCTAGGTGTGCATGTGTGTGTGCGGGCATACATACGTGAGGGCTAGGGCTGCCAGAGAAGAGATTGCACCATCCATCAAGGGGTCTCCCTGCAAGTGGTAAGTGACAGACTTGGCAGGGACCAAGGACAGGCAGGCAGGCTCAAGAAGAGTACAGGACTTGGGGGCTAAGGACTGTTTCAACCCTCCTCCTTCTCCCAACAG
Seq C2 exon
GCTGTAAGCAGCTGCATGAAGACCTGAAGACCTGGAGCAAGGGTCCTCCCCTTAAACCCTTGACATTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(85.4=69.5)
A:
NA
C2:
PF0213416=UBACT=PU(4.3=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACCTCCTTTACGTGCTG
R:
CTTCTCAAATGTCAAGGGTTTAAGGG
Band lengths:
246-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]