MmuINT0168880 @ mm10
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107980029-107980959:+
Coord C1 exon
chr9:107980029-107980182
Coord A exon
chr9:107980183-107980876
Coord C2 exon
chr9:107980877-107980959
Length
694 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CGTGCCCTGCTCCCTGACAGGCC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GACATGCATTTCCTCTACGTACTGGCAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGAACTGCTGACGCGGCTGCTAGAGTCTGATTCCAGGCCCCAGAACCTCTTCTCTGCTGAGCATG
Seq A exon
GTGAGGTCCCAGTCTTGGACAGCTCTTCTTGCCCCTTCCCCACATGGGTCTTCAGCCTGTGCTTAGAAGGAAGATGGGGCCTAAAAGCCAGACAGCCAACTTCCTTTTCTCTGGTCCTCTTTGGTTTTGTTTGTGTGCTCATTTAATTTTTATTTTGTATGTATGAGTATTTTACCTACATGTATACCTATATACCTATGTGCCACTGGTGCCCACAAAAGCCAAAAGAGTTTATCGATCCCCTGAAACTGGAGTTACCATGTAAGCGCTGGGAATCGAATTAGAGTCCTTTACAAGAGGAACAAGTGCTCTTAACTGCTAAGCCATCTCTCCAGCCCTTCTCTGGGCCTCTTACTTTGCTGATTAGTTTATTTCCATCCTCTAGTCCCTCAGTAGGTCCTCTCTCTGCTGCCTAAAACATATCCCTGTTCTCTTGAGAGACTTTCAGAATTTGAAAAAAAAAAAAAAAATTCTAAGGAGTGCCTAGCTGTGGCCCAGGGTAAGGACAGAGCCACGTGGAACCACAGGGGAAGAGTGAGGCTGCAAGGATGTAGATGTCAGCATCAACCAAAAGAGTCCTTAGTTAGACCAAGTGGCGGTGGATGGCAGGTTTGGCAGAGCCCAAGAACGGACACGAGGCTCTGGAGTGCAGGAAATGAGTTAAGGACTGAGCCCGTGCCCTGCTCCCTGACAG
Seq C2 exon
GCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGACTGGAGGAAGGGGCCCCCGCTGAAGCCTGTGCTGTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596:ENSMUST00000035216:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(83.3=67.3)
A:
NA
C2:
PF0213416=UBACT=PU(4.3=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTCCTCTACGTACTGGCA
R:
CTTCACAAACAGCACAGGC
Band lengths:
232-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types