GgaINT0022380 @ galGal4
Intron Retention
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2430194-2430583:-
Coord C1 exon
chr12:2430397-2430583
Coord A exon
chr12:2430292-2430396
Coord C2 exon
chr12:2430194-2430291
Length
105 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTTCCCCCTGCGTCCCTAGAGC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GACACCCACCTGGCATACGTGGAGGCTGCTGCCCACCTTCTGGCTCACACCTACAGGCTGCCATCCTGCGGTGACCGGGTGGCCACGCGGGATGTGCTCTGCCACACGGTGCTGCCACCCTTCGTGCCCAAGGATGGGCGCTACGTCCCCACGGTGGAGGGCGTGGAAGAGGTGGAGGAGGCTCTGG
Seq A exon
GTAAGGCTACTGCACGTCTGTGTCCCCAAAGCCTGATGAAGAGGCACGGGCCAGGAGCTGCAGCTGTGATAACGGGTTCCTGGCCTGTTCCCCCTGCGTCCCTAG
Seq C2 exon
AGCCTGGACAGCTGCTGGAACTCGTGCAAGAGCTGGCGCGGTGGAAACAGGAGCTAGGAGGGGGCACAGAGGCAATGGACCCCATCCACTATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(89.9=100)
A:
NA
C2:
PF0213416=UBACT=PD(0.1=0.0),PF0213416=UBACT=PU(4.5=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTTCTGGCTCACACCTA
R:
GGATGGGGTCCATTGCCTCT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]