RnoINT0159030 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116758708-116759777:+
Coord C1 exon
chr8:116758708-116758867
Coord A exon
chr8:116758868-116759694
Coord C2 exon
chr8:116759695-116759777
Length
827 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
CATGGCCTGCTCCCTGACAGGCC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GACACGCATTTCCTCTATGTACTGGCAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCGGGCTCACAAAGTCAGACTGCACTCAGGGAACTGCTGACACTGACACTGCTGCAGGAGCCTGATTCCATGCCCCAGAACCTCTTCTCTGCTGAGTTTG
Seq A exon
GTGAGGTCCTGGTCTGGAACAGCTATTCTTGCCCCTTCCACCACTGGTCTCCAGCCTGTGCTTAAGGAAGGTGGCACCTAAAAGCCAGACAGTCAACTTACTTCCTTCTCTCCAGGCCTCTTTGGTTTTGTTTGTTCCTGTGCTCATTTAATTTACTTTGAGTGTATGAGTATTTTACCTACATGTATATCTATATACCATGGGTGTGCCTGGTGCCCACAGAAGCCAGAAGAGGGCACTGATCCCCTGAAACTGGAGTTACCGACAATTATGGGTTACCCTGTAAGCGCTGGGAATGGAACTAGAGTCCTTTACAAGAGCAACAAGTGCTTTTAACTGCTGAGCCATCTCTTCTCTGGCCCTCTTTCTTTGCTGCTTAGTTTATTTCCATCCTCTGGCCCCTCAGTGGGTCCTTTCTCTGCTGCCTCAAACACATCCCAGTTTTCTTAAGAGTCTGGATTTTTTTTTTTTCTTCTATTTTTCGGAGCTGAGGACTGAACCCAGGGCCTTGCGCTTACTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCACATTCCAGTTTTCTTGAGAGACTTTCAGAATTTGAAAAAAAAAATTCTGAGCTGTGCCTAGCTATGGTCCCGGGTGAGGGCAGAGCCACATGGGTAACCACAGAGAAAGAGTGGGGGCAAGGAAATAAATGTCAGCCTCCACCAAGAGAGTCCTTGGTTAGATCAAGTGGCAGCGAATGGCAGGTTTGGCAGAGCCCAAGAATGGACACGAGGCTCTAGAGTACAGGAAATGAACTAAGGACTGATTCCATGGCCTGCTCCCTGACAG
Seq C2 exon
GCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGATGACTGGAACAAGGGGCCTCCACTGAAGCCTGTGCTGTTTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(82.5=61.1)
A:
NA
C2:
PF0213416=UBACT=PU(4.3=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCATTTCCTCTATGTACTGGC
R:
CTTCCCAAACAGCACAGGC
Band lengths:
240-1067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]