BtaINT0156011 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039851 | UBAC1
Description
Bos taurus UBA domain containing 1 (UBAC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076281]
Coordinates
chr11:103524069-103525146:-
Coord C1 exon
chr11:103525038-103525146
Coord A exon
chr11:103524283-103525037
Coord C2 exon
chr11:103524069-103524282
Length
755 bp
Sequences
Splice sites
5' ss Seq
CCAGTACGT
5' ss Score
7.19
3' ss Seq
GGGGCCGTCTTACCTTGCAGCAT
3' ss Score
8.35
Exon sequences
Seq C1 exon
CCATGCTGGACGAAGATGAGGACGAGCGCATGGACGAGGCAGCCCTGCGGCAGCTCACGGAGATGGGCTTCCCGGAGACCAGGGCGGCTAAGGCCCTGCGGCTGAACCA
Seq A exon
GTACGTCTGGGCCCCCCGCCGCGGGTGACACCCTTCTGCCCCGGGCCCCGTGACTGAGTCGCCTCCAGTGTGCGTGAGTGTCGGTAGAGGACCTGGACGCGTGTTCCGGAGTCACAGCACTGGCCGCCTCCAGGTCTTACAGGGCGGTGTGTGGTGGACCCGCTTATTGGGAGCGTGGCATGTGATGGTGGTCGTGCACCTCACCAGGCTCTCGTTTTCCGGGAACTTGGATCACAGCCTGCTCCCGGCGGGGCCGAGGAGGACCATGGCACATGGGCGGTGGCGTCCTGGGAGTCTCCTGTAGTTTCCTATTGTTAGTTACTTGTCGGTTACGTGCCTTTCTGTATGTTCGGTTCTGAAATAAATTGTCTGTAACCGAGGGGTGGTCAGCGGGCTGTGTTCTTTTCGCTTTTGAACCAGTCTCTCGTGGGCACCTCGTGGGTTTGGCTCCCGTGGCTTTCTGCACTTGGGCATCTGTTCTGGCTGCGCCTCGTGGCAGATTAGGGCGGGGCCGGGGCTTCAGCCGCGCTGCGTTAGATCCTTGTACAGGACTCGGCAGCTCGCACTAGAGAAGCCACGAAGTCAGAGAGGCTTTTCTCGGGACGCAAAGGCCCGGTTCCCTGGCCTGAGGTGCTGCTCAGAGGCCATCTTACCTTGGAGCACGTCAGTGCTCACGAGCCCTTGGGGCACGTCAGTGCTCAGGGGCCGTCTTACCTTGCGGCACATCGGTGCTCAGGGGCCGTCTTACCTTGCAG
Seq C2 exon
CATGTCGGTGCCCCAGGCCATGGAGTGGCTCATCGAGCACGCAGATGACCCCACCATCGACACTCCACTCCCAGGCCCATCCTCGCAGGGAGAGGCAGGCGCCGAGGCCGCCCCTGCTGCCGGGACCAGTGAGGAGGAGGAGGAGGCCAGAGATGAGCTGACGGAGATCTTCAAGAAGATCCGGAGGAAAAGGGAGTTTCGTGCGGATGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039851:ENSBTAT00000033827:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=NA C2=0.681
Domain overlap (PFAM):
C1:
PF0062726=UBA=PU(70.3=70.3)
A:
NA
C2:
PF0062726=UBA=PD(27.0=13.9),PF0062726=UBA=PU(8.1=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCTGGACGAAGATGAGG
R:
CATCCGCACGAAACTCCCTTT
Band lengths:
318-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development