GgaINT0126411 @ galGal3
Intron Retention
Gene
ENSGALG00000001713 | UBAC1
Description
NA
Coordinates
chr17:8858683-8860328:+
Coord C1 exon
chr17:8858683-8858791
Coord A exon
chr17:8858792-8860096
Coord C2 exon
chr17:8860097-8860328
Length
1305 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGTTTTGATTTTCTTTTCAGTAT
3' ss Score
8.9
Exon sequences
Seq C1 exon
CCATGCTGGATGAGGATGAGGAAGACAGAGTGGATGAGATAGCTCTGCGGCAACTTACAGAAATGGGGTTTCCAGAGAGCAGAGCTGTCAAAGCCCTTCGATTAAATCA
Seq A exon
GTAAGTGTACTTGGCATGCTGCCTGTAAATTACTTGGTATGGTTAAAAAAAGCAACTTTTTTTTTTTTTTTTGAGGGAAATCTCCTTATGTGGGTCACCTAGAACTAGCAAAAAGCATTGGCTCAAGGAAGAATGCTGCCTCAGGCAACCTGCAGGTGCAGCTGGTGCAGGAAAGGGGAAGCTATGTTGTACTTGCTCTGGAAAGAAGTCAGTCTGCAGTTCCCAGGGCTGTCAAGCTCTCACTGTTTTCAAGTATTAAACTCACATCTTCTGCTCTAAAATTTTACAGAGGAAAAAAAAGCAAGCTAAGCCCATCCAGACTGGTTTGTCAACTGTAGCAAAATACTTTATGCTGATCTTTTAAATAAAGCATTCCAAAAATATTACAAAGCCCAGATAGCAACTGTAGAGAAATAGGAGGTAATATAGTTCGTCTTGTGCCATAAAAAGAAACAGTTGTGCTGCCTCAATTCTGAGATGGGTTTCTTATGTTATTCACAAAAATGTCTAATGATATCAAATCCACATAATAGTCCTTTTTCCAGTAGCTTTCCTGTGGTCTTTGAAGGACTTTCTCCCTCAATATCCTCCATCTTTCATGTCGTAACTGAAAAGCCAAATAGGCAAGGGCTTCCCTTTCGTTTTTTAGAACATCTAATTACTTTGTGGTCGAATGAAATTGCACGTTCAGTTGCTCTGTTATCTTTGCTTCCTATGAATTCATTGAGAAGGCATGTGCTGGATCTCCCATGATCTCTTAGCTTGAGCGCTTGCAGTCAGTTGCCTGTGTTAAATTTTGTTCTCGCTCAAGGCATATAGTGCATGTGTAATGTTTGTCCCACTCTTTCTTCCACTGTTAATGGCATTCCTTTATCACTAGATGTCTGAGATAGATCTCCCTAAGATGCAAAGGAATAGCTTCTCTCTGAGATGTAATTCCATTTGGAACGTTCTTTGCAGTTTTGTCAGCAGTTGCAAATAGTCATTGTATGTTTGTTGTGAAATAGAGCTGATGATGTGGAGAATAAGATGACTCCCTGTGAAGTGGCCTTTAAAACCTGAGTTACAACTGTCCAGGTTGGACTTCACTCCTCTGTCATCCTGACTTCAGAGGTTATTGTGTGGCCCTGAGTGAGTGTAGAATTAAAGTGCTTCAACATTTGTTCCAATACTTTGTGTGACTATTCAGATAATAATTAATCAGCTAGTCAAGATACCATAGGAATAAATACAAAGCAAAAATGTGTGCAGTGCTGCTGTATATCTGGAGTGTTCCTCATCCCTTTGTTTTGATTTTCTTTTCAG
Seq C2 exon
TATGTCAGTGACACAGGCCATGGAGTGGTTGATAGAACATGCAGATGACCCTGCAGTGGATGCTCCACTGCCAGGTCAGACTCCATCCGAAGCTGCAGCTGAAGCTGGTGCATCCTCTGCTGAAGCAACTGCAGGTCCAAGTTCAGAAGCAGGTGGGGAAGAAGCCAAAGATGAGCTGACTGAAATATTTAAGAAGATACGAAGGAAAAGAGAGTTTCGCCCAGACCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001713:ENSGALT00000002629:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.615
Domain overlap (PFAM):
C1:
PF0062726=UBA=PU(70.3=70.3)
A:
NA
C2:
PF0062726=UBA=PD(27.0=12.8),PF0062726=UBA=PU(8.1=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGATGAGGATGAGGAAGA
R:
GGGTCTGGGCGAAACTCTCTT
Band lengths:
334-1639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]